Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00706
         (626 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    24   0.91 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    24   1.2  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    23   2.1  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         22   3.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.4  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   6.4  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
 Frame = -1

Query: 575 VCPSSFQNRFVNTSTSATIPTMLC------CLMAEPSWLQTVAL 462
           +C S+ Q  F+N     +IP   C       L+ E SWL    L
Sbjct: 199 ICESAAQLLFMNVQWVRSIPAFTCLPLSDQLLLLEESWLDLFVL 242


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
 Frame = -1

Query: 575 VCPSSFQNRFVNTSTSATIPTMLC------CLMAEPSWLQTVAL 462
           +C S+ Q  F+N     +IP   C       L+ E SWL    L
Sbjct: 199 ICESAAQLIFMNVQWVRSIPAFTCLPLSDQLLLLEESWLDLFVL 242


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 17/72 (23%), Positives = 30/72 (41%)
 Frame = -1

Query: 524 TIPTMLCCLMAEPSWLQTVALLLYA*HQDCVQSQWRSFQRHVPDDLYHPFSLQDCTQWYP 345
           T+P ++C ++     +  + LL+YA    C Q+       H   + Y    L++  Q Y 
Sbjct: 285 TVPMIVCPIVWLMDEVVEIYLLVYACASTCEQANDTPSILHELRNNYFHMDLENNVQSYS 344

Query: 344 QA*LQQASHFQL 309
              L Q   F +
Sbjct: 345 LQLLHQKVQFSV 356


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 311 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFA 421
           VG  +      EG     L E +GD G+L  AS +FA
Sbjct: 91  VGTALTFCLQEEGGTTSQLIELLGDAGKLL-ASVHFA 126


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = +1

Query: 409  WKLRHCDWTQS 441
            W   HCDW ++
Sbjct: 2271 WNKDHCDWPEN 2281


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 489 TFLAPDGSFTLVR 451
           T   PDG FT++R
Sbjct: 579 TVTVPDGGFTIIR 591


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,206
Number of Sequences: 336
Number of extensions: 3447
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)