Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00706
(626 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 235 4e-63
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 235 4e-63
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 235 4e-63
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 29 0.73
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 27 2.2
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 5.1
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 9.0
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha... 25 9.0
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 235 bits (575), Expect = 4e-63
Identities = 109/163 (66%), Positives = 134/163 (82%), Gaps = 1/163 (0%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 203 VHFRDPYKFKTRKELFIVPK-LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 379
V FR+PY ++T E F+ + +YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119
Query: 380 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNR 508
GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS R
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSAR 162
Score = 67.7 bits (158), Expect = 1e-12
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +3
Query: 531 GGRIDKPILKAGRAYHKYKVKRNCWPYVRGVA 626
GGRIDKP+LKAGRA+HKY+VKRNCWP RGVA
Sbjct: 171 GGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVA 202
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 235 bits (575), Expect = 4e-63
Identities = 109/163 (66%), Positives = 134/163 (82%), Gaps = 1/163 (0%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 203 VHFRDPYKFKTRKELFIVPK-LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 379
V FR+PY ++T E F+ + +YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119
Query: 380 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNR 508
GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS R
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSAR 162
Score = 67.7 bits (158), Expect = 1e-12
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +3
Query: 531 GGRIDKPILKAGRAYHKYKVKRNCWPYVRGVA 626
GGRIDKP+LKAGRA+HKY+VKRNCWP RGVA
Sbjct: 171 GGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVA 202
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 235 bits (575), Expect = 4e-63
Identities = 109/163 (66%), Positives = 134/163 (82%), Gaps = 1/163 (0%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 203 VHFRDPYKFKTRKELFIVPK-LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 379
V FR+PY ++T E F+ + +YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119
Query: 380 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNR 508
GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS R
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSAR 162
Score = 67.7 bits (158), Expect = 1e-12
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +3
Query: 531 GGRIDKPILKAGRAYHKYKVKRNCWPYVRGVA 626
GGRIDKP+LKAGRA+HKY+VKRNCWP RGVA
Sbjct: 171 GGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVA 202
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 28.7 bits (61), Expect = 0.73
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 543 QYVHLSNNTDHALLLDGRTFLAPDGSFTLV 454
Q VHL+ + H+ LL +TF P FTL+
Sbjct: 608 QNVHLNKDFRHSFLLTYKTFTTPQELFTLL 637
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 540 IDKPILKAGRAYHKYKVKRNCWPYVRG 620
++KPI K+K K +CW +RG
Sbjct: 68 VEKPIPVTKEELAKHKTKEDCWIAIRG 94
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 390 PLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFF 292
P++P+F SR H P G+ T FP F+
Sbjct: 11 PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFY 41
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 44 QRKGAGSVFVSHTKKRKGAPKLRSLD 121
+R+G+ +HTK+ K APK D
Sbjct: 167 KRRGSVGTTATHTKRSKNAPKTSPKD 192
>SPBC887.10 |mcs4||two-component response regulator
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +1
Query: 244 ALHCPEALHRPICLLWKESNS*SWKC 321
A C + L +P+ L+W E W C
Sbjct: 481 AAGCNDFLTKPVSLVWLEKKITEWGC 506
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,054
Number of Sequences: 5004
Number of extensions: 57902
Number of successful extensions: 168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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