Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00706
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      241   3e-64
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555...    31   0.75 
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611...    29   2.3  
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26...    29   2.3  
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373...    29   3.0  
06_03_1136 - 27897822-27898235,27898344-27898488,27899127-278992...    28   7.0  
11_06_0377 - 22900042-22900452,22900527-22902236                       27   9.2  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  241 bits (590), Expect = 3e-64
 Identities = 109/164 (66%), Positives = 136/164 (82%), Gaps = 1/164 (0%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
           MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60

Query: 203 VHFRDPYKFKTRKELFIVPK-LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 379
           V FR P+++K +KELF+  + +YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E  +
Sbjct: 61  VTFRHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHV 120

Query: 380 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRA 511
           GDRG  ARASG++A VI HNPD   +R+KLPSGAKK++PSS RA
Sbjct: 121 GDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRA 164



 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 26/32 (81%), Positives = 29/32 (90%)
 Frame = +3

Query: 531 GGRIDKPILKAGRAYHKYKVKRNCWPYVRGVA 626
           GGR +KP+LKAG AYHKY+VKRNCWP VRGVA
Sbjct: 172 GGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVA 203


>01_07_0112 -
           41149461-41151674,41151688-41153265,41154344-41155507,
           41155807-41156293,41156603-41156759,41157303-41157378
          Length = 1891

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = -1

Query: 437 CVQSQWRSFQRHVPDDLYHPFSLQDCTQWYPQA*LQQASHFQLQELLSFHNKQIGLCRAS 258
           C    W++   H+P  L H  +  +C  WY  +    AS   L  L S     I + R  
Sbjct: 73  CSCGLWKATTHHLPSALCHGLNYVNCAMWYTTSICVAASPPDL-HLASISQSHIPVDRVH 131

Query: 257 GQ*RAPSLS 231
            +   PS+S
Sbjct: 132 CESAIPSMS 140


>06_01_0811 -
           6113491-6113925,6114079-6114185,6114569-6114788,
           6115112-6115199,6115301-6115431,6115924-6116099,
           6116465-6116529,6117014-6117094,6117219-6117358,
           6117446-6117532,6117614-6117827,6118102-6118260,
           6118860-6118936,6119629-6119796
          Length = 715

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +2

Query: 461 VKLPSGAKKVLPSSNRAWSVLLLRWTY*QTYFESWKGIPQVQG 589
           V +P+     +  S          WTY  T+F SW  +P +QG
Sbjct: 48  VLVPADISTTITGSQEGDVGFFWSWTYWSTFFLSWSIVPTLQG 90


>06_01_0026 +
           265755-265968,267319-267468,267694-267738,267786-268460,
           268779-268843,268854-269073,269163-269438,269547-269663,
           269776-269853,269930-270184,270235-270323,270403-270816
          Length = 865

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 406 LWKLRHCDWT 435
           LWK RHCDWT
Sbjct: 73  LWKCRHCDWT 82


>01_06_0823 +
           32234588-32234936,32236354-32237093,32237260-32237343,
           32237909-32239263,32240399-32240460,32240544-32241144,
           32241229-32241310,32241778-32241840
          Length = 1111

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -2

Query: 346 LRHSSNRHHISNFKSCFLSTINKLACVELRDNEELLPCLELVWIAEVYNSQRCTSTR 176
           +R   NR  +     C+        CVE +D   LLP LE V+++ + +S+ CTS +
Sbjct: 70  VRKRRNREELRGLFECYRRI---RLCVERKD-ARLLPELEQVYLSLIASSRGCTSVQ 122


>06_03_1136 -
           27897822-27898235,27898344-27898488,27899127-27899204,
           27899302-27899400,27900508-27900613,27901323-27901428
          Length = 315

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 449 KRTRVKLPSGAKKVLPSSNRAWSVLLLRWTY*QTYFESWK 568
           K + +K+ SG  K++  S   W +L + W     YF+SW+
Sbjct: 38  KSSILKIMSGKYKIVDDS---WFLLNIEWNPISIYFDSWE 74


>11_06_0377 - 22900042-22900452,22900527-22902236
          Length = 706

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +2

Query: 299 ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRL-ARASGNFATVIGHNPDAKRTRVK 466
           A L+ G   P+G + E   VC L +   D  R+ A  +G    + G  PD +  RV+
Sbjct: 373 AALDDGEERPLGGLVEELFVCRLGD--DDEVRVGANHNGEGRRLRGPRPDGEEARVR 427


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,217,552
Number of Sequences: 37544
Number of extensions: 399234
Number of successful extensions: 1017
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)