Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00706
(626 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.) 271 3e-73
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05) 201 3e-52
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44) 41 7e-04
SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2) 29 2.3
SB_6614| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023) 27 9.4
SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 271 bits (665), Expect = 3e-73
Identities = 125/164 (76%), Positives = 142/164 (86%), Gaps = 1/164 (0%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIR QRKGAGS+F SHTK RKGA LR DYAERHGYIKGVVK+IIHDPGRGAPLAV
Sbjct: 1 MGRVIRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAV 60
Query: 203 VHFRDPYKFKTRKELFIVPK-LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 379
V FRDPY++K RKELF+ + +YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK
Sbjct: 61 VVFRDPYRYKLRKELFVATEGMYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKT 120
Query: 380 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRA 511
GDRGRLAR SGN+ATVI HN + KRTRVKLPSG KKV+PSSNRA
Sbjct: 121 GDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSNRA 164
Score = 70.1 bits (164), Expect = 1e-12
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +3
Query: 531 GGRIDKPILKAGRAYHKYKVKRNCWPYVRGVA 626
GGRIDKP+LKAGRAYHKYK KRNCWP VRGVA
Sbjct: 172 GGRIDKPMLKAGRAYHKYKAKRNCWPRVRGVA 203
>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
Length = 123
Score = 201 bits (491), Expect = 3e-52
Identities = 91/122 (74%), Positives = 107/122 (87%), Gaps = 1/122 (0%)
Frame = +2
Query: 149 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIVPK-LYTGQFVYCGKKATLEVGNVM 325
GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+ + +YTGQF+YCGKKA L++GN +
Sbjct: 1 GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEGMYTGQFIYCGKKAALQIGNCL 60
Query: 326 PVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSN 505
PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN + KRTRVKLPSG KKV+PSSN
Sbjct: 61 PVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSN 120
Query: 506 RA 511
RA
Sbjct: 121 RA 122
>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
Length = 222
Score = 41.1 bits (92), Expect = 7e-04
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 6/125 (4%)
Frame = +2
Query: 143 IKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIVP-KLYTGQFVYC--GKK---AT 304
IK V + +DP R A +A+V +++L I P ++ G + GK A
Sbjct: 56 IKDKVLQVGYDPCRSARIALVAGNG----SNQEKLVIAPDEIQVGDVMTASRGKPESLAL 111
Query: 305 LEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAK 484
L+ G+ P+ +P GT+V N+E G +LARA+G A +I + V+LPS +
Sbjct: 112 LKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSKVE 169
Query: 485 KVLPS 499
K + S
Sbjct: 170 KEVSS 174
>SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 31.1 bits (67), Expect = 0.77
Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = -2
Query: 454 TLSIRIVSNHSGEVSRGTCQTTSITHFLFKIAHNG--TLRHSSNRHHISNFKSCFLSTIN 281
T SI ++ + + + GTC+ + FK+ H + H + H ++N C + ++
Sbjct: 76 THSILVLLSAAACAANGTCEEPRRRNTFFKLKHKDRMLIDHVISSHDVTNPIHCSMECLS 135
Query: 280 KLACVELRDNEELLP 236
CV +++ P
Sbjct: 136 NQRCVSFNLKKQITP 150
>SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 341 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRAWS 517
P G I+ + +GD+ R +GN T A + +PS L + +RAWS
Sbjct: 218 PNGRILPEIPNHVGDKHEKKR-NGNAKTNEADRIGADSSSTAIPSSCTSTLSNHSRAWS 275
>SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2)
Length = 466
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 341 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRAWS 517
P G I+ + +GD+ R +GN T A + +PS L + +RAWS
Sbjct: 332 PNGRILPEIPNHVGDKHEKKR-NGNAKTNEADRIGADSSSTAIPSSCTSTLSNHSRAWS 389
>SB_6614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 334 SNRHHISNFKSCFLSTINKLACVELRDNEE 245
+NRH I + + ST NK C +D E+
Sbjct: 196 TNRHRIGKYDATAASTKNKQKCTTTKDTEQ 225
>SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1516
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 227 TCMDRGSVQQPKVHLYQGHGLY 162
T D G +Q P HLY+ HG Y
Sbjct: 515 TVTDIGDLQYPVFHLYKEHGWY 536
>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1351
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 314 GNVMPVGAMPEGTIVCNLEEKMGDRGRLAR-ASGNFATVIG 433
G+ PV +P G +C + +G R AR G F ++ G
Sbjct: 737 GHSKPVDGLPRGDAICGCPKAIGRRHARARLLEGRFLSISG 777
>SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 584
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 140 IHDVQRNLKSEV*ERLSSSSCEKRKLNRHPYAEHVLHD 27
I +V + + + R++SS C KRKL R E+ + D
Sbjct: 470 IQEVVKRERKKQRNRIASSKCRKRKLEREARLENRVKD 507
>SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)
Length = 565
Score = 27.5 bits (58), Expect = 9.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 193 FGCCTLPRSIQVQDK 237
FGCC +P ++ QDK
Sbjct: 182 FGCCVMPNAVHCQDK 196
>SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1798
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = +2
Query: 347 GTIVCNLEE---KMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRAWS 517
G I+C + + K D G+ R G F ++ + + +R K+ A +VL + W+
Sbjct: 1575 GPILCAIHQVVNKSLDNGKQCREHGGFKKIVAISKNKERYSYKILKTANQVLMT---LWA 1631
Query: 518 VLLLRWTY*QTYFESWKGIPQVQGQT 595
+ LR + + +E K + G T
Sbjct: 1632 LTALRNSLKKEEWELTKEVTDEYGPT 1657
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,060,844
Number of Sequences: 59808
Number of extensions: 458382
Number of successful extensions: 1130
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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