Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00706
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical pr...   253   7e-68
AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical ...    36   0.024
Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...    31   0.89 
Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical p...    28   4.8  
Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical p...    28   6.3  
U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z83238-4|CAB05795.1|  341|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical
           protein B0250.1 protein.
          Length = 260

 Score =  253 bits (620), Expect = 7e-68
 Identities = 112/164 (68%), Positives = 137/164 (83%), Gaps = 1/164 (0%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
           MGR IR QRKGAG +F SH K RKGA KLR LDYAERHGYIKG+VKDIIHDPGRGAPLA+
Sbjct: 1   MGRRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAI 60

Query: 203 VHFRDPYKFKTRKELFIVPK-LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 379
           + FRDPYK+KT K   +  + ++TGQF++CG KA +++GN++PVG +PEGT +CN+E K 
Sbjct: 61  IAFRDPYKYKTVKTTVVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKS 120

Query: 380 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRA 511
           GDRG +ARASGN+ATVI HNPD K+TR++LPSGAKKV+ S NRA
Sbjct: 121 GDRGVIARASGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRA 164



 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 26/32 (81%), Positives = 28/32 (87%)
 Frame = +3

Query: 531 GGRIDKPILKAGRAYHKYKVKRNCWPYVRGVA 626
           GGR DKP+LKAGR+YHKYK KRN WP VRGVA
Sbjct: 172 GGRTDKPLLKAGRSYHKYKAKRNSWPRVRGVA 203


>AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical
           protein F56B3.8 protein.
          Length = 321

 Score = 35.9 bits (79), Expect = 0.024
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +2

Query: 314 GNVMPVGAMPEGTIVCNLEE-KMGDRGRLARASGNFATVIGHNPDAKRTRVKLP 472
           GN  P+G++  GT++ ++E     D     +A+G  AT++ H  D   T VKLP
Sbjct: 160 GNAYPIGSLAAGTVINSIERYPTMDSETFVKAAGTSATIVRHQGDF--TVVKLP 211


>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = +2

Query: 428 IGHNPDAKRTRVKLPSGAKKVLPSSNRAWSVLLLR 532
           IGH  D +RTR  LP+G KKVL  + +   +LL++
Sbjct: 57  IGHGSD-RRTRFVLPNGYKKVLVQNVKDLDMLLMQ 90


>Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical
           protein F58E10.3a protein.
          Length = 561

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAER 133
           +GR  R+ +KG    F +HT   K    L+ LD A++
Sbjct: 464 IGRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQ 500


>Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 134 HGYIKGVVKDIIHDPGRGAPLAVVHFR 214
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 134 HGYIKGVVKDIIHDPGRGAPLAVVHFR 214
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical
           protein Y57G11C.44 protein.
          Length = 155

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 71  VSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPL 196
           +S  ++RK +     LD+++  G  K ++KDI +D  +  P+
Sbjct: 1   MSEVRQRKSSIIDSDLDFSDSDGEFKEIIKDIENDQWKDKPV 42


>U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical
           protein T26A5.4 protein.
          Length = 487

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 608 WPAVTFDLVLVVCPSSFQNRFVNTSTSATIPTMLCCLM 495
           W  +T  L L    S+F  R +       +PTM+ C M
Sbjct: 90  WNFITLFLALAFQTSAFNLRIILMQNPPALPTMIVCFM 127


>Z83238-4|CAB05795.1|  341|Caenorhabditis elegans Hypothetical
           protein T08G3.5 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 134 HGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIV 256
           HG    +V  ++H P R A L ++  +   K  T  ++F+V
Sbjct: 285 HGLFSTIVMLVVHKPYRQATLQILKIKRIEKIGTANKVFLV 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,259,616
Number of Sequences: 27780
Number of extensions: 341166
Number of successful extensions: 869
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)