Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00706
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    25   0.60 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   1.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   1.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   1.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   1.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.4  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 428 IGHNPDAKRTRVKLPSGAKKVLPSSNRAWSVLLLR 532
           IG+  + K+TR  LP+G +KVL  + +   VL+++
Sbjct: 57  IGYGSN-KKTRHMLPTGFRKVLVHNVKELEVLMMQ 90


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 379 HFLFKIAHNGTLRHSSNRHHI 317
           HF  +I  NGT+ +   RH I
Sbjct: 163 HFALRIYRNGTVNYLMRRHLI 183


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 379 HFLFKIAHNGTLRHSSNRHHI 317
           HF  +I  NGT+ +   RH I
Sbjct: 163 HFALRIYRNGTVNYLMRRHLI 183


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 379 HFLFKIAHNGTLRHSSNRHHI 317
           HF  +I  NGT+ +   RH I
Sbjct: 214 HFALRIYRNGTVNYLMRRHLI 234


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 379 HFLFKIAHNGTLRHSSNRHHI 317
           HF  +I  NGT+ +   RH I
Sbjct: 163 HFALRIYRNGTVNYLMRRHLI 183


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 586  LYLWYALPAFKIGLSIRPPQQQYRPCS 506
            L L +A PA+  G    P QQQ  P S
Sbjct: 1263 LMLQHAPPAYSCGTVSVPQQQQLPPSS 1289


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,005
Number of Sequences: 438
Number of extensions: 4180
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)