Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00706
(626 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 244 4e-65
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 239 1e-63
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 236 8e-63
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim... 46 3e-05
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim... 46 3e-05
At3g45860.1 68416.m04963 receptor-like protein kinase, putative ... 28 4.4
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli... 28 5.8
At5g42400.1 68418.m05162 SET domain-containing protein (TXR7) co... 27 7.7
At4g33410.1 68417.m04748 signal peptide peptidase family protein... 27 7.7
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 27 7.7
>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)
Length = 258
Score = 244 bits (597), Expect = 4e-65
Identities = 112/164 (68%), Positives = 137/164 (83%), Gaps = 1/164 (0%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 203 VHFRDPYKFKTRKELFIVPK-LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 379
V FR P++FK +KELF+ + +YTGQF+YCGKKATL VGNV+P+ ++PEG +VCN+E +
Sbjct: 61 VTFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHV 120
Query: 380 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRA 511
GDRG LARASG++A VI HNPD+ TR+KLPSG+KK++PS RA
Sbjct: 121 GDRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKKIVPSGCRA 164
Score = 60.9 bits (141), Expect = 7e-10
Identities = 25/32 (78%), Positives = 28/32 (87%)
Frame = +3
Query: 531 GGRIDKPILKAGRAYHKYKVKRNCWPYVRGVA 626
GGR +KP+LKAG AYHKY+VKRN WP VRGVA
Sbjct: 172 GGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVA 203
>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
protein L8, cytosolic, tomato, PIR1:R5TOL8
Length = 258
Score = 239 bits (585), Expect = 1e-63
Identities = 109/164 (66%), Positives = 135/164 (82%), Gaps = 1/164 (0%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 203 VHFRDPYKFKTRKELFIVPK-LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 379
V FR P++FK +KELF+ + +YTGQF+YCGKKATL VGNV+P+ ++PEG ++CN+E +
Sbjct: 61 VAFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHV 120
Query: 380 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRA 511
GDRG ARASG++A VI HNPD +R+KLPSG+KK++PS RA
Sbjct: 121 GDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRA 164
Score = 64.9 bits (151), Expect = 4e-11
Identities = 26/32 (81%), Positives = 29/32 (90%)
Frame = +3
Query: 531 GGRIDKPILKAGRAYHKYKVKRNCWPYVRGVA 626
GGR +KP+LKAG AYHKY+VKRNCWP VRGVA
Sbjct: 172 GGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVA 203
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 236 bits (578), Expect = 8e-63
Identities = 109/165 (66%), Positives = 137/165 (83%), Gaps = 2/165 (1%)
Frame = +2
Query: 23 MGRVIRAQRKGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 199
MGRVIRAQRKGA GSVF SHT RKG K RSLDY ER+GY+KG+V +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLA 60
Query: 200 VVHFRDPYKFKTRKELFIVPK-LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEK 376
V FR P+++ +KELF+ + +YTGQ++YCGKKA L VGNV+P+G++PEG ++CN+E
Sbjct: 61 RVAFRHPFRYMKQKELFVAAEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELH 120
Query: 377 MGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRA 511
+GDRG LARASG++A VI HNP++ TRVKLPSG+KK+LPS+ RA
Sbjct: 121 VGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRA 165
Score = 64.5 bits (150), Expect = 5e-11
Identities = 26/32 (81%), Positives = 27/32 (84%)
Frame = +3
Query: 531 GGRIDKPILKAGRAYHKYKVKRNCWPYVRGVA 626
GGR +KP LKAG AYHKYK KRNCWP VRGVA
Sbjct: 173 GGRTEKPFLKAGNAYHKYKAKRNCWPVVRGVA 204
>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/67 (35%), Positives = 38/67 (56%)
Frame = +2
Query: 311 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 490
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 491 LPSSNRA 511
+ + RA
Sbjct: 118 INAKCRA 124
>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/67 (35%), Positives = 38/67 (56%)
Frame = +2
Query: 311 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 490
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 491 LPSSNRA 511
+ + RA
Sbjct: 118 INAKCRA 124
>At3g45860.1 68416.m04963 receptor-like protein kinase, putative
similar to receptor-like protein kinase 4 (gi:13506745),
5 (gi:13506747), and 6 (gi:13506749) from Arabidopsis
thaliana; contains Pfam protein kinase domain PF00069
Length = 676
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/69 (26%), Positives = 35/69 (50%)
Frame = -2
Query: 391 TSITHFLFKIAHNGTLRHSSNRHHISNFKSCFLSTINKLACVELRDNEELLPCLELVWIA 212
+++T+ I NG SSN++ + F+ ST+N LA VE ++ + +++
Sbjct: 137 STVTYDGSAILLNGANISSSNQNQVDEFRDLVSSTLN-LAAVEAANSSKKFYTRKVITPQ 195
Query: 211 EVYNSQRCT 185
+Y +CT
Sbjct: 196 PLYLLVQCT 204
>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein helicase,
putative similar to SP|O75643 U5 small nuclear
ribonucleoprotein 200 kDa helicase {Homo sapiens};
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF02889:
Sec63 domain
Length = 2171
Score = 27.9 bits (59), Expect = 5.8
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -2
Query: 346 LRHSSNRH---HISNFKSCFLSTINKLACVELRDNEELLPCLELVWIAEVY 203
L+ S+RH H+S LS + C+E+ D EL P L L IA Y
Sbjct: 1800 LQGVSHRHLSDHLSELVENTLSDLEASKCIEVEDEMELSP-LNLGMIASYY 1849
>At5g42400.1 68418.m05162 SET domain-containing protein (TXR7)
contains Pfam profile PF00856: SET domain
Length = 1423
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +2
Query: 83 KKRKGAPKL-RSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFI-V 256
K +KG KL R +H + +KD+ D GR P+A+ ++K+LF+ +
Sbjct: 1122 KLQKGPNKLIRRRKPLAKHTTERSPIKDLSVDDGRPKPIALKPLEKLSSKPSKKKLFLSI 1181
Query: 257 PK 262
PK
Sbjct: 1182 PK 1183
>At4g33410.1 68417.m04748 signal peptide peptidase family protein
contains Pfam domain PF04258: Membrane protein of
unknown function (DUF435)
Length = 372
Score = 27.5 bits (58), Expect = 7.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2
Query: 583 YLWYALPAFKIGL 545
Y+WYALP + IGL
Sbjct: 301 YIWYALPGYAIGL 313
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -2
Query: 421 GEVSRGTCQTTSITHFLFKIAHNGTLRHSSNRHHISNF 308
G+V GTC +A +G +R N HH+ +F
Sbjct: 117 GDVVGGTCVNRGCVPSKALLAVSGRMRELQNEHHMKSF 154
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,458,927
Number of Sequences: 28952
Number of extensions: 315059
Number of successful extensions: 820
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -