Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00705
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    33   0.044
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    32   0.077
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo...    29   0.41 
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    29   0.54 
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    29   0.72 
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c...    28   1.3  
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats...    27   1.7  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    27   1.7  
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    27   2.9  
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        26   3.8  
SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr 2...    26   5.1  
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    25   6.7  
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    25   8.8  

>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 32.7 bits (71), Expect = 0.044
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 6   GVYRGLGTQLVRQIPNTAIMMSTYEAVVYLL 98
           G+Y GL   L+R +PN  I+  +YE +++ +
Sbjct: 330 GLYGGLTAHLLRVVPNACILFGSYEVIMHFI 360



 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 3   RGVYRGLGTQLVRQIPNTAIMMSTYEAVVYLLTTHFNN 116
           R ++RGLG  L+  IP  +I   +Y     +L   FNN
Sbjct: 120 RALFRGLGPNLIGTIPARSINFFSYGNGKRILADLFNN 157


>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 31.9 bits (69), Expect = 0.077
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 6   GVYRGLGTQLVRQIPNTAIMMSTYE 80
           GVYRGLG+ LV   P  ++  +TYE
Sbjct: 124 GVYRGLGSILVGSAPGASLFFTTYE 148


>SPAC19G12.05 |||mitochondrial citrate
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 3   RGVYRGLGTQLVRQIPNTAIMMSTYEAV 86
           RG+YRGL   + RQ  N+ +  + Y ++
Sbjct: 160 RGLYRGLAATVARQAANSGVRFTAYNSI 187


>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 9   VYRGLGTQLVRQIPNTAIMMSTYEAVVYLLTTH 107
           +YRGL     RQIP T +  +++E +V  L T+
Sbjct: 175 LYRGLAPLWFRQIPYTMMKFASFERIVEALYTY 207


>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 6   GVYRGLGTQLVRQIPNTAIMMSTYEAVVYLLTTHFN 113
           G+Y G+   L+  +P TA+  S+YE     L +++N
Sbjct: 71  GLYSGVCPMLIGSLPATALFFSSYEYTKRHLMSNYN 106


>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 3   RGVYRGLGTQLVRQIPNTAIMMSTYEAVVYLLTTHF 110
           RG+ RGLGT  V QI      +  YE +   L T F
Sbjct: 84  RGLQRGLGTAYVYQICLNGCRLGFYEPIRRTLNTWF 119


>SPAC4G9.20c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 3   RGVYRGLGTQLVRQIPNTAIMMSTYEAV 86
           RG YRG    LVR  P  A+    YE V
Sbjct: 268 RGFYRGFVPVLVRAAPANAVTFYVYETV 295


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 3   RGVYRGLGTQLVRQIPNTAIMMSTYE 80
           RG+Y+GL   L++  P+ AI    YE
Sbjct: 392 RGLYKGLSPNLLKVAPSVAISYLVYE 417


>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 88  TTASYVDIMMAVFGICLTSCVPRPL 14
           T   Y D+   VFG CL S   +PL
Sbjct: 34  TLGKYGDVRFGVFGYCLNSNCSKPL 58


>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -2

Query: 534 RNRQTVGCRDQNNNYSVSLISYSNLT*GEILKNLSLFQTTKKKTRISS 391
           R  QT+G RD+  +Y  S +  S+          +L +T  ++ RISS
Sbjct: 147 RLAQTLGIRDEEVSYEASRMPISHKWTNATRHRQALLRTQARRIRISS 194


>SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 6   GVYRGLGTQLVRQIPNTAIMMSTYEAV 86
           G Y+G    L+R +P T I    YE V
Sbjct: 239 GFYKGFLPHLLRVVPQTCITFLVYEQV 265


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 6   GVYRGLGTQLVRQIPNTAIMMSTYE 80
           G+YRG+G  ++  +P+ +I    YE
Sbjct: 69  GLYRGVGPMMLGYLPSWSIYFVVYE 93


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 6   GVYRGLGTQLVRQIPNTAIMMSTYEAVVYLL 98
           G +RG  + +++ IP  +I   TYE V  +L
Sbjct: 284 GFFRGYSSNMLKIIPVMSITWYTYETVSKML 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,195,175
Number of Sequences: 5004
Number of extensions: 39560
Number of successful extensions: 106
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)