Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00705
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_1015 - 22255135-22255693,22256437-22256836,22257938-222583... 35 0.045
05_03_0668 + 16793061-16793181,16793289-16793384,16794406-167945... 33 0.24
01_05_0099 - 18098169-18098390,18098878-18098972,18099063-180991... 31 0.56
03_02_0489 + 8836306-8836500,8836906-8837082,8837175-8837321,883... 31 0.74
05_07_0283 - 28937027-28937110,28937211-28937549,28937641-289377... 31 0.97
08_02_0530 + 18244933-18245217,18245309-18245383,18246176-182462... 30 1.3
01_01_0282 - 2349336-2349583,2349719-2349786,2349880-2349950,235... 30 1.3
09_04_0372 + 17026551-17026778,17027469-17027830,17027925-170279... 30 1.7
07_03_0117 + 13589997-13590998 30 1.7
05_01_0505 + 4207841-4208455,4209982-4210143,4210247-4210717 30 1.7
01_01_1139 - 9024609-9024708,9024832-9024910,9025083-9025252,902... 29 2.3
10_07_0101 - 12872296-12873288 29 3.0
03_05_1041 - 29884975-29885107,29885485-29885552,29885652-298858... 29 3.0
09_04_0303 - 16505782-16506902,16507232-16507292 29 3.9
03_01_0534 + 3996479-3997458,3997938-3998265 29 3.9
01_03_0118 - 12688137-12688162,12688236-12688395,12689442-126895... 29 3.9
05_04_0010 - 17132810-17132935,17133017-17133169,17133202-171332... 28 5.2
02_05_0867 - 32338313-32338331,32338372-32338496,32338972-323391... 28 5.2
09_04_0608 + 18924648-18924899,18926341-18926435,18926903-189272... 28 6.9
01_05_0410 + 21914995-21915168,21915268-21915353,21915446-219156... 28 6.9
09_06_0076 + 20710482-20710670,20711313-20711547,20711664-207116... 27 9.1
03_02_0148 - 5928703-5928931,5929099-5929171,5929288-5929408,592... 27 9.1
01_01_0877 - 6878905-6879600,6880696-6880968 27 9.1
>10_08_1015 -
22255135-22255693,22256437-22256836,22257938-22258371,
22259586-22259977
Length = 594
Score = 35.1 bits (77), Expect = 0.045
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 6 GVYRGLGTQLVRQIPNTAIMMSTYEAV 86
G+++GLG L R++P A+M YEA+
Sbjct: 466 GLFKGLGPTLAREVPGNALMFGVYEAI 492
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 3 RGVYRGLGTQLVRQIPNTAIMMSTYE 80
+G+++GL + R++P A+M YE
Sbjct: 167 KGLFKGLVPTMGREVPGNAVMFGVYE 192
>05_03_0668 +
16793061-16793181,16793289-16793384,16794406-16794512,
16794726-16794774,16794858-16794967,16795329-16795423,
16795524-16795612,16795775-16795869,16795976-16796053,
16796425-16796481,16796776-16797027
Length = 382
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 3 RGVYRGLGTQLVRQIPNTAIMMSTYEAVVYLLTTH 107
RG+YRGL ++ +PN A+ + YE + LL+++
Sbjct: 90 RGMYRGLSPTILALLPNWAVYFTVYEQLKSLLSSN 124
>01_05_0099 -
18098169-18098390,18098878-18098972,18099063-18099131,
18099277-18099352,18101412-18101524,18104137-18104185,
18104540-18104572,18105446-18105552,18106892-18106990,
18107122-18107203
Length = 314
Score = 31.5 bits (68), Expect = 0.56
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 6 GVYRGLGTQLVRQIPNTAIMMSTYEAVVYLL 98
G YRG T L+R PN I ++YE + L+
Sbjct: 278 GFYRGCATNLLRTTPNAVITFTSYEMINRLM 308
>03_02_0489 +
8836306-8836500,8836906-8837082,8837175-8837321,
8837636-8837737,8837824-8837894,8837992-8838059,
8838595-8838836
Length = 333
Score = 31.1 bits (67), Expect = 0.74
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 3 RGVYRGLGTQLVRQIPNTAIMMSTYEAVVYLLT 101
RG+YRG+ + + +P+ I+ TYE + +LT
Sbjct: 295 RGLYRGILPEYCKVVPSVGIVFMTYETLKSILT 327
>05_07_0283 -
28937027-28937110,28937211-28937549,28937641-28937754,
28937843-28937955,28939050-28939087,28939315-28939478,
28939746-28939794,28940986-28941152
Length = 355
Score = 30.7 bits (66), Expect = 0.97
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 3 RGVYRGLGTQLVRQIPNTAIMMSTYE 80
RG+++G GT R +PN+A+ +YE
Sbjct: 98 RGLFKGNGTNCARIVPNSAVKFFSYE 123
>08_02_0530 +
18244933-18245217,18245309-18245383,18246176-18246292,
18246503-18246631,18246726-18246785,18247271-18247441,
18247596-18247689,18247860-18247951,18248071-18248220,
18248407-18248465,18249735-18249864
Length = 453
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 3 RGVYRGLGTQLVRQIPNTAIMMSTYEAVVYLL 98
+G++ G+G ++ R P+ I++S YE V Y L
Sbjct: 416 KGLFTGVGPRVARAGPSVGIVISFYEVVKYAL 447
>01_01_0282 -
2349336-2349583,2349719-2349786,2349880-2349950,
2350022-2350123,2350309-2350449,2350540-2350716,
2352228-2352338
Length = 305
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 3 RGVYRGLGTQLVRQIPNTAIMMSTYEAVVYLLTT 104
RG YRG+ + ++ +P+ I TYE + LL++
Sbjct: 265 RGFYRGIVPEYLKVVPSVGIAFMTYETLKSLLSS 298
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 3 RGVYRGLGTQLVRQIPNTAIMMSTYEAV 86
+G+Y+GLG L+ P+ AI + YE++
Sbjct: 166 KGLYKGLGATLLGVGPSIAISFTVYESL 193
>09_04_0372 +
17026551-17026778,17027469-17027830,17027925-17027968,
17028079-17028293,17028405-17028529,17028617-17028692
Length = 349
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 6 GVYRGLGTQLVRQIPNTAIMMSTYEAVVYLLTTH 107
G++RGL RQIP T + +TYE +V + H
Sbjct: 197 GLFRGLVPLWGRQIPYTMMKFATYENIVEMAYKH 230
>07_03_0117 + 13589997-13590998
Length = 333
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 3 RGVYRGLGTQLVRQIPNTAIMMSTYEAV 86
RGVYRGL L R +P + + YEA+
Sbjct: 193 RGVYRGLCPSLARVLPMSGLNFCVYEAL 220
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 3 RGVYRGLGTQLVRQIPNTAIMMSTYEAVVYLL 98
R +Y GLG V+++P+TA+ + Y+ + LL
Sbjct: 289 RQLYAGLGITYVKKVPSTAVGLVAYDYMKSLL 320
>05_01_0505 + 4207841-4208455,4209982-4210143,4210247-4210717
Length = 415
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 6 GVYRGLGTQLVRQIPNTAIMMSTYEAVVYLLT 101
G+YRGLG ++ +P I YEA +LT
Sbjct: 379 GLYRGLGPSCMKLVPAAGISFMCYEACKKVLT 410
>01_01_1139 -
9024609-9024708,9024832-9024910,9025083-9025252,
9025339-9025451,9025518-9025586,9025867-9025944,
9026022-9026084,9026590-9026670,9027166-9027222,
9027352-9027705
Length = 387
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +3
Query: 6 GVYRGLGTQLVRQIPNTAIMMSTYEAVVYLLTT 104
G+YRG ++ +PN++I ++ ++ V L++T
Sbjct: 338 GLYRGFVPNALKNLPNSSIKLTAFDTVKTLIST 370
>10_07_0101 - 12872296-12873288
Length = 330
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 3 RGVYRGLGTQLVRQIPNTAIMMSTYEA 83
RG YRG G L +P A+ M+ EA
Sbjct: 91 RGFYRGFGASLAGTVPARAVYMAALEA 117
>03_05_1041 -
29884975-29885107,29885485-29885552,29885652-29885816,
29886262-29886372,29886999-29887072,29887387-29887480,
29887750-29887849,29888075-29888151,29888856-29888935,
29889025-29889157
Length = 344
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 3 RGVYRGLGTQLVRQIPNTAIMMSTYEAVVYL 95
RG YRG+ + L++ +P ++ YE V+ L
Sbjct: 306 RGFYRGITSNLLKNLPAASLTFVVYENVIKL 336
>09_04_0303 - 16505782-16506902,16507232-16507292
Length = 393
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 3 RGVYRGLGTQLVRQIPNTAIMMSTY 77
RG+YRG G ++ P+ A+ +TY
Sbjct: 232 RGLYRGFGMSILTYAPSNAVWWATY 256
>03_01_0534 + 3996479-3997458,3997938-3998265
Length = 435
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 3 RGVYRGLGTQLVRQIPNTAIMMSTYEA 83
RG YRG G L +P A+ M+ EA
Sbjct: 86 RGFYRGFGASLAGTVPARALYMAALEA 112
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 3 RGVYRGLGTQLVRQIPNTAIMMSTY 77
RG+YRG G +V P+ A+ ++Y
Sbjct: 188 RGLYRGFGLSIVTYAPSNAVWWASY 212
>01_03_0118 -
12688137-12688162,12688236-12688395,12689442-12689583,
12689680-12689876,12690374-12690755,12692317-12692399
Length = 329
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 3 RGVYRGLGTQLVRQIPNTAIMMSTY 77
RG+YRG G ++ Q P +A+ S+Y
Sbjct: 188 RGLYRGFGITMLTQSPASALWWSSY 212
>05_04_0010 -
17132810-17132935,17133017-17133169,17133202-17133263,
17133384-17133435,17133794-17133883,17134075-17134170,
17134258-17134311,17134575-17134665,17134996-17135072,
17135770-17135852,17136057-17136111
Length = 312
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 3 RGVYRGLGTQLVRQIPNTAIMMSTYE 80
RG+Y G G+ L+R +P AI YE
Sbjct: 148 RGLYAGYGSFLLRDLPFDAIQFCIYE 173
>02_05_0867 -
32338313-32338331,32338372-32338496,32338972-32339186,
32340043-32340086,32340187-32340548,32341357-32341650
Length = 352
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 6 GVYRGLGTQLVRQIPNTAIMMSTYEAVVYLLTTH 107
G+Y+G+ RQIP T + +++E +V ++ H
Sbjct: 219 GLYKGIVPLWGRQIPYTMMKFASFETIVEMIYKH 252
>09_04_0608 +
18924648-18924899,18926341-18926435,18926903-18927236,
18927345-18927582,18927813-18928069
Length = 391
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 6 GVYRGLGTQLVRQIPNTAIMMSTYEA 83
G+YRG G ++ +PN+ I YEA
Sbjct: 352 GLYRGWGASCLKVMPNSGITWMFYEA 377
>01_05_0410 +
21914995-21915168,21915268-21915353,21915446-21915656,
21915869-21915998,21916740-21916924,21917014-21917145,
21917329-21917433
Length = 340
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 3 RGVYRGLGTQLVRQIPNTAIMMSTYE 80
RG Y+G G ++R +P A+ TYE
Sbjct: 83 RGFYKGNGASVLRIVPYAALHYMTYE 108
>09_06_0076 +
20710482-20710670,20711313-20711547,20711664-20711689,
20712000-20712293,20712603-20712728,20712827-20712896,
20712992-20713182,20713394-20713519,20713878-20714279,
20714364-20714758,20714861-20715315,20715403-20715524,
20715653-20715693,20716026-20716129,20716363-20716576,
20717667-20717780,20718576-20718612
Length = 1046
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +3
Query: 345 YEIMSLSIVVKF*RSHLKFWFFFWWFEIMR---DFSKFLLMLDSNMKLGIH 488
+E++ + ++K R +L +FEI D++KF N+KLGIH
Sbjct: 621 FELLQQNKILKVIRKNLVKKCVELFFEIAENKEDYNKFYKAFSKNLKLGIH 671
>03_02_0148 -
5928703-5928931,5929099-5929171,5929288-5929408,
5929907-5929952,5930361-5930571,5930837-5930986,
5931122-5931179,5931285-5931400,5931986-5932091
Length = 369
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 3 RGVYRGLGTQLVRQIPNTAIMMSTYEAV 86
+G+Y G + L R +P +M++ YEA+
Sbjct: 209 KGLYAGYWSTLARDVPFAGLMVTFYEAM 236
>01_01_0877 - 6878905-6879600,6880696-6880968
Length = 322
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 3 RGVYRGLGTQLVRQIPNTAIMMSTYE 80
RG+YRGL +R P + TYE
Sbjct: 178 RGIYRGLAVTALRDAPAHGVYFWTYE 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,916,853
Number of Sequences: 37544
Number of extensions: 203531
Number of successful extensions: 418
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -