Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00705
         (622 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)                   53   2e-07
SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0)                   37   0.015
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)                   31   0.57 
SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0)                   31   0.75 
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)             31   1.00 
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)           30   1.3  
SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0)                   29   4.0  
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)                   27   9.3  

>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 1024

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 22/32 (68%), Positives = 27/32 (84%)
 Frame = +3

Query: 3    RGVYRGLGTQLVRQIPNTAIMMSTYEAVVYLL 98
            RG+Y GLGT ++RQ+PNTAIM  TYE VVY+L
Sbjct: 989  RGLYGGLGTHVIRQVPNTAIMFFTYEGVVYIL 1020


>SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 200

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +3

Query: 3   RGVYRGLGTQLVRQIPNTAIMMSTYEAVVYLLT 101
           RG+YRGL    +R  P  A+M + YE V  LLT
Sbjct: 164 RGLYRGLSINYLRVCPQVAVMFAVYEVVKQLLT 196


>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 264

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +3

Query: 3   RGVYRGLGTQLVRQIPNTAIMMSTYEAVVYLL 98
           RG+YRGL    +R  P  AIM   YE     L
Sbjct: 230 RGLYRGLSINYLRVCPQVAIMFGVYEVTKQFL 261


>SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 313

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 3   RGVYRGLGTQLVRQIPNTAIMMSTYE 80
           RGVY+G+   L+R +P TA+   +YE
Sbjct: 248 RGVYKGVCATLLRDVPGTAMYFLSYE 273


>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
          Length = 868

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +3

Query: 3   RGVYRGLGTQLVRQIPNTAIMMSTYEAVVYLLT 101
           RG Y+GL   LVR IP        YE    LLT
Sbjct: 261 RGCYQGLSATLVRNIPANGFFFGFYEFTKNLLT 293


>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
          Length = 773

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 6   GVYRGLGTQLVRQIPNTAIMMSTYE 80
           G ++G GT +VR +P TA+  + YE
Sbjct: 609 GYFKGNGTNIVRIVPYTAVQFAAYE 633


>SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 309

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 3   RGVYRGLGTQLVRQIPNTAIMMSTYEAVVYLL 98
           RG++RGL   ++R    T +   TYE ++ L+
Sbjct: 176 RGIFRGLPPTMIRDTFGTGVWYLTYEGLLMLM 207


>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 611

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 3   RGVYRGLGTQLVRQIPNTAIMMSTYEAVVYLLT 101
           RG +RG+     R IP  A+   +++ V  LLT
Sbjct: 314 RGCFRGMAITTTRDIPAFALYFGSFQYVCELLT 346


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,419,047
Number of Sequences: 59808
Number of extensions: 249286
Number of successful extensions: 443
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)