Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00705
(622 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49070-1|CAA88869.1| 384|Caenorhabditis elegans Hypothetical pr... 47 1e-05
X76116-1|CAA53722.1| 384|Caenorhabditis elegans carrier protein... 47 1e-05
AL023835-8|CAA19491.1| 483|Caenorhabditis elegans Hypothetical ... 31 0.50
Z48240-1|CAA88283.1| 312|Caenorhabditis elegans DIF-1 protein. 30 1.2
X76115-1|CAA53721.1| 312|Caenorhabditis elegans carrier protein... 30 1.2
U61949-5|AAB03153.2| 312|Caenorhabditis elegans Differentiation... 30 1.2
Z68160-3|CAA92291.1| 269|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z74028-1|CAA98424.1| 334|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z81525-3|CAB04258.1| 467|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z81455-3|CAB03808.2| 890|Caenorhabditis elegans Hypothetical pr... 27 8.2
AL032623-19|CAA21519.2| 890|Caenorhabditis elegans Hypothetical... 27 8.2
>Z49070-1|CAA88869.1| 384|Caenorhabditis elegans Hypothetical
protein T09F3.2 protein.
Length = 384
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +3
Query: 9 VYRGLGTQLVRQIPNTAIMMSTYEAVVYLL 98
+YRGL QL+R +PNTAI M TYE VVY+L
Sbjct: 352 MYRGLSVQLMRTVPNTAITMGTYEFVVYML 381
>X76116-1|CAA53722.1| 384|Caenorhabditis elegans carrier protein
(c2) protein.
Length = 384
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +3
Query: 9 VYRGLGTQLVRQIPNTAIMMSTYEAVVYLL 98
+YRGL QL+R +PNTAI M TYE VVY+L
Sbjct: 352 MYRGLSVQLMRTVPNTAITMGTYEFVVYML 381
>AL023835-8|CAA19491.1| 483|Caenorhabditis elegans Hypothetical
protein Y37A1B.8 protein.
Length = 483
Score = 31.5 bits (68), Expect = 0.50
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +3
Query: 402 WFFFWWFEIMRDFSKFLLMLDSNMKLGIHCNYYFDLDSLQSVGYVING 545
+ FFWW+ + DF L M+ + C + + + ++V ++ NG
Sbjct: 6 FLFFWWYSVKADFESNLKMVVLTHQCDPECTFNYSEITSKTVQFLPNG 53
>Z48240-1|CAA88283.1| 312|Caenorhabditis elegans DIF-1 protein.
Length = 312
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 9 VYRGLGTQLVRQIPNTAIMMSTYE 80
+YRG G L+R IP +A +S YE
Sbjct: 165 IYRGTGATLLRDIPASAAYLSVYE 188
>X76115-1|CAA53721.1| 312|Caenorhabditis elegans carrier protein
(c1) protein.
Length = 312
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 9 VYRGLGTQLVRQIPNTAIMMSTYE 80
+YRG G L+R IP +A +S YE
Sbjct: 165 IYRGTGATLLRDIPASAAYLSVYE 188
>U61949-5|AAB03153.2| 312|Caenorhabditis elegans Differentiation
abnormal protein 1 protein.
Length = 312
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 9 VYRGLGTQLVRQIPNTAIMMSTYE 80
+YRG G L+R IP +A +S YE
Sbjct: 165 IYRGTGATLLRDIPASAAYLSVYE 188
>Z68160-3|CAA92291.1| 269|Caenorhabditis elegans Hypothetical
protein D1046.3 protein.
Length = 269
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 3 RGVYRGLGTQLVRQIPNTAIMMSTYEAV 86
RG YRG G+ + R+IP + I +EA+
Sbjct: 139 RGFYRGYGSTVAREIPFSIIQFPIWEAL 166
>Z74028-1|CAA98424.1| 334|Caenorhabditis elegans Hypothetical
protein C14C10.1 protein.
Length = 334
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 6 GVYRGLGTQLVRQIPNTAIMMSTYEAVVYLLTTH 107
G ++GL RQIP T + +E ++ L+ TH
Sbjct: 185 GFFKGLPPLWTRQIPYTTVKFVCFERIMELMYTH 218
>Z81525-3|CAB04258.1| 467|Caenorhabditis elegans Hypothetical
protein F33A8.4 protein.
Length = 467
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 517 RLSRSK**LQ-CIPNFIFESNIRRNFEKSLIISNHQKKNQ 401
RL R K +Q N +F++ R NF K NHQ++NQ
Sbjct: 11 RLERKKRFMQQAKKNNVFKARRRNNFSKRPNFHNHQQENQ 50
>Z81455-3|CAB03808.2| 890|Caenorhabditis elegans Hypothetical
protein B0399.2 protein.
Length = 890
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 360 LSIVVKF*RSHLKFWFFFWWFEIMRDFSKFLLMLDSNMKLGIHCNYYF 503
LSIVV +H FW +W+++ R +S L +N L N YF
Sbjct: 76 LSIVVTLVSAH--FWLREFWWDVNRRYSLAATFLVTNQLLIQDLNDYF 121
>AL032623-19|CAA21519.2| 890|Caenorhabditis elegans Hypothetical
protein B0399.2 protein.
Length = 890
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 360 LSIVVKF*RSHLKFWFFFWWFEIMRDFSKFLLMLDSNMKLGIHCNYYF 503
LSIVV +H FW +W+++ R +S L +N L N YF
Sbjct: 76 LSIVVTLVSAH--FWLREFWWDVNRRYSLAATFLVTNQLLIQDLNDYF 121
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,844,773
Number of Sequences: 27780
Number of extensions: 211075
Number of successful extensions: 452
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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