Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00704
(751 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.) 95 7e-20
SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 3e-06
SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12) 48 1e-05
SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037) 47 2e-05
SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18) 47 2e-05
SB_39560| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00055) 44 1e-04
SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07) 42 7e-04
SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021) 41 0.001
SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08) 38 0.007
SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13) 38 0.011
SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09) 36 0.035
SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19) 36 0.046
SB_39138| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_7987| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_57688| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 33 0.19
SB_30093| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 33 0.19
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09) 33 0.19
SB_14063| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 33 0.19
SB_12727| Best HMM Match : zf-CHY (HMM E-Value=3.7e-34) 33 0.25
SB_43428| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0) 33 0.25
SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 32 0.57
SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 32 0.57
SB_16806| Best HMM Match : CUE (HMM E-Value=1e-07) 32 0.57
SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 31 0.76
SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12) 31 0.76
SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_24433| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_24608| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-14) 30 2.3
SB_20928| Best HMM Match : NHL (HMM E-Value=0) 30 2.3
SB_38572| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0034) 30 2.3
SB_11042| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00013) 30 2.3
SB_43060| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12) 29 4.0
SB_25082| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_41318| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_30389| Best HMM Match : Helicase_C (HMM E-Value=3.3e-21) 29 4.0
SB_16517| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07) 29 4.0
SB_23542| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_14646| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_32455| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23) 28 7.0
SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012) 28 7.0
SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_38103| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 94.7 bits (225), Expect = 7e-20
Identities = 36/56 (64%), Positives = 43/56 (76%)
Frame = +2
Query: 272 ENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCRHEMPTDDE 439
E CPICL + E GE K+MPC+H+FHP CIL WL+KTNSCP CRHE+PTD+E
Sbjct: 56 ELSTSSCPICLGDYEKGESTKQMPCDHLFHPGCILPWLEKTNSCPVCRHELPTDNE 111
>SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 402
Score = 49.6 bits (113), Expect = 3e-06
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +2
Query: 290 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWL-DKTNSCPFCRHEMPT 430
C ICL + G+K++ +PC+H +H +C+ WL + +CP C+ + T
Sbjct: 301 CAICLDEYKEGDKLRILPCDHAYHCKCVDPWLTEGKRTCPVCKRPVET 348
>SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)
Length = 558
Score = 47.6 bits (108), Expect = 1e-05
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +2
Query: 266 VIENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFC 412
V E K C ICL+ + G+ ++ +PC H FH C+ WL +CP C
Sbjct: 207 VTEKNPK-CVICLEGFKNGQDLRIVPCRHEFHKECVDPWLLSNFTCPLC 254
>SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)
Length = 303
Score = 46.8 bits (106), Expect = 2e-05
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 290 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTN-SCP 406
C IC++ G+ +K +PC H FH CI TWL T+ CP
Sbjct: 257 CLICMEEYAVGDSMKYLPCRHNFHSACIRTWLTYTSCKCP 296
>SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18)
Length = 398
Score = 46.8 bits (106), Expect = 2e-05
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +2
Query: 278 QKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCRHEMPTDDE 439
+ K CPICL+ + + C H + C+ WL+ +CP CR +D+
Sbjct: 258 ESKSCPICLEEFTPETPTRLLVCGHKYCEPCLSRWLENNTTCPICRKPTSRNDD 311
>SB_39560| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00055)
Length = 545
Score = 44.4 bits (100), Expect = 1e-04
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 290 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWL 385
C +C+ + EK++K+PCNH FH +CI WL
Sbjct: 361 CVVCMMDYTNREKLRKLPCNHDFHSKCIDRWL 392
>SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 41.5 bits (93), Expect = 7e-04
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 290 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCP 406
C +CL + V+K+ C H+FH CI +WL + CP
Sbjct: 212 CGVCLSAYHPLQYVRKLQCRHVFHRDCIDSWLATQSICP 250
>SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
Length = 617
Score = 41.5 bits (93), Expect = 7e-04
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = +2
Query: 290 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWL--DKT---NSCPFCR 415
C ICL + G + +PC H FH CI WL D T + CP CR
Sbjct: 560 CVICLDEFKPGCTLLGLPCGHSFHQHCIEVWLAGDNTAPHHCCPNCR 606
>SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)
Length = 358
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 272 ENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWL 385
+N C +CL + E + V+ +PC H +H RCI WL
Sbjct: 287 QNDDARCVVCLVDFEEKQLVRTLPCLHEYHTRCIDKWL 324
>SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08)
Length = 688
Score = 38.3 bits (85), Expect = 0.007
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 293 PICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCRHEMPTD 433
P C ++ +++ C HIF CI W D+ +CP CR + D
Sbjct: 484 PTC--QVKLAKQIMLRTCKHIFCEDCISLWFDREQTCPMCRARVAGD 528
>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
Length = 553
Score = 37.5 bits (83), Expect = 0.011
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 299 CLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCR 415
C+ E + + C+H F C+ +WL K N+CP CR
Sbjct: 371 CIVCQELFIRATTLTCSHSFCEYCLQSWLRKRNTCPICR 409
>SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09)
Length = 310
Score = 35.9 bits (79), Expect = 0.035
Identities = 23/76 (30%), Positives = 30/76 (39%)
Frame = +2
Query: 290 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCRHEMPTDDENXXXXXXXXX 469
C IC LE + PC H + C+L WL N+CP +D
Sbjct: 18 CCICRDVLE---EPLMAPCEHSYCSACVLGWLTHYNTCP--------EDRQSLWPSDLKP 66
Query: 470 XXXQSQNDLDALHIQC 517
+NDLD+L I C
Sbjct: 67 IFRYMKNDLDSLKIHC 82
>SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19)
Length = 320
Score = 35.5 bits (78), Expect = 0.046
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Frame = +2
Query: 218 LTSACIERGSTKIQDV---VIE-NQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWL 385
L S C G T+ ++V + E + + CP+CL+ +A V+ +PC H+F CI
Sbjct: 43 LVSYCCIFGDTEEEEVLQNIFELDYQPDCPVCLQ--QASYPVR-LPCGHMFCFLCIKGVA 99
Query: 386 DKTNSCPFCRHEMPTD 433
++ C CR + D
Sbjct: 100 LRSRKCAICRQPISPD 115
>SB_39138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 624
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 260 DVVIENQKKGCPICLKNLEAGEKVKKMPCN---HIFHPRCILTWLDKTNSCPFCRHEMPT 430
DV + C +CLK + A + ++PC+ IFH +C+ + + C FC T
Sbjct: 215 DVSLNPGPTNCAVCLKGIRARQP--RLPCHLCEQIFHLKCLGAEYELSRCCQFCAVRSTT 272
Query: 431 D 433
+
Sbjct: 273 E 273
>SB_7987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = +2
Query: 341 PCNHIFHPRCILTWLDKT---NSCPFCR 415
PC+H F CI WLD+T + CP C+
Sbjct: 174 PCDHYFCVLCICEWLDQTYNKSGCPVCK 201
>SB_57688| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 262
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = +2
Query: 341 PCNHIFHPRCILTWLDKT---NSCPFCR 415
PC+H F CI WLD+T + CP C+
Sbjct: 48 PCDHYFCVLCICEWLDQTYNKSGCPVCK 75
>SB_30093| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 301
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = +2
Query: 341 PCNHIFHPRCILTWLDKT---NSCPFCR 415
PC+H F CI WLD+T + CP C+
Sbjct: 174 PCDHYFCVLCICEWLDQTYNKSGCPVCK 201
>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
Length = 2059
Score = 33.5 bits (73), Expect = 0.19
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 290 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWL-DKTNSCPFCRHEMPT 430
C ICL++ G +V + C+H H C + + + +CP CRH + T
Sbjct: 1985 CCICLEDAFTGCQV--LACSHKVHRDCAVAMVRNGVRNCPICRHPLYT 2030
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = +1
Query: 118 ENWVMGNNQIISYILQDFS*ILA*IELVQRSGQAYLRL---HRKRQYKNTRCCNRKSKER 288
E W GN + + + + S + +E + ++ + L HRKR+ + + +ER
Sbjct: 1638 EGWSHGNERSLEALEETMSSVWNTLESFAKERESLMILEEEHRKREREREEERRKDVRER 1697
Query: 289 LPNMFEELRSWRK 327
+ EE+R+ R+
Sbjct: 1698 MKRRVEEIRAQRQ 1710
>SB_14063| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 301
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = +2
Query: 341 PCNHIFHPRCILTWLDKT---NSCPFCR 415
PC+H F CI WLD+T + CP C+
Sbjct: 174 PCDHYFCVLCICEWLDQTYNKSGCPVCK 201
>SB_12727| Best HMM Match : zf-CHY (HMM E-Value=3.7e-34)
Length = 168
Score = 33.1 bits (72), Expect = 0.25
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +2
Query: 230 CIERGSTKIQDVVIENQKKGCPICLKNLEAGEKVKKM-PCNHIFHPRCI 373
C+ G V ++ + CP+CL+++ M PC H+ H C+
Sbjct: 113 CLGVGLKDSHKCVDKSARNDCPVCLEDIHTSRISANMSPCGHMIHSTCM 161
>SB_43428| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0)
Length = 758
Score = 33.1 bits (72), Expect = 0.25
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +2
Query: 230 CIERGSTKIQDVVIENQKKGCPICLKNLEAGEKVKKM-PCNHIFHPRCI 373
C+ G V ++ + CP+CL+++ M PC H+ H C+
Sbjct: 113 CLGVGLKDSHKCVDKSARNDCPVCLEDIHTSRISANMSPCGHMIHSTCM 161
>SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 33.1 bits (72), Expect = 0.25
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +2
Query: 344 CNHIFHPRCILTWLDKTNSCPFCRHEMPTDD 436
C H+F +C++ W+ + +CP ++ DD
Sbjct: 72 CGHVFCSQCLVHWIAENGTCPLTCEQLAIDD 102
>SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 32.7 bits (71), Expect = 0.33
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 260 DVVIENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTW 382
D + N + CP+CL +L + C H+F CIL W
Sbjct: 93 DATMSNSAQ-CPVCLMSLSEQKLGTPNSCMHVFCLECILEW 132
>SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 858
Score = 31.9 bits (69), Expect = 0.57
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 290 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCR 415
CPICL+ + E ++ C H F CI + CP CR
Sbjct: 678 CPICLETITYPETLQG--CGHTFCRPCITEASKSSKLCPTCR 717
>SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 911
Score = 31.9 bits (69), Expect = 0.57
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 290 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCR 415
CPICL+ + E ++ C H F CI + CP CR
Sbjct: 753 CPICLETITYPETLQG--CGHTFCRPCITEASKSSKLCPTCR 792
>SB_16806| Best HMM Match : CUE (HMM E-Value=1e-07)
Length = 322
Score = 31.9 bits (69), Expect = 0.57
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 290 CPICLKNLEAGEKVKKMPCNHIFH 361
C IC N+ K +K+PCNH+FH
Sbjct: 91 CAICWDNMG---KARKLPCNHLFH 111
>SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 346
Score = 31.5 bits (68), Expect = 0.76
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +2
Query: 290 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDK--TNSCPFCR-HEMPTD 433
C IC+ LE C H F C+ TWL + SCP CR H + D
Sbjct: 18 CNICVGVLE---NAITTICGHSFCESCLETWLSRPEVQSCPSCRSHVLSLD 65
>SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12)
Length = 654
Score = 31.5 bits (68), Expect = 0.76
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 341 PCNHIFHPRCILTWLDKTNSCPFCRHEM 424
PC H+F C+ LD CP CR +
Sbjct: 393 PCGHVFCRACLNRSLDHRPGCPICRSSL 420
>SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1716
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 344 CNHIFHPRCILTWLDKTNSCPFCRHEM 424
C H F CI++WL + CP C E+
Sbjct: 1382 CLHSFCRSCIVSWLQASYHCPVCDTEV 1408
>SB_24433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 486
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 290 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCRHEMPT 430
CPIC + V+ +PC H+ CI L C FC+ + T
Sbjct: 430 CPICCAMRIS---VRFLPCRHVSCRSCITRHLMNNKECFFCKEVVDT 473
>SB_24608| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-14)
Length = 390
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Frame = +2
Query: 296 ICLKNLEAGEKVKKMPCN-----HIFHPRCILTWLDKT--NSCPFCR 415
IC AGE+ PC+ H C+LTW K N+C CR
Sbjct: 201 ICRICHSAGEEPLVTPCHCSGSAKFVHATCLLTWFKKAVKNTCELCR 247
>SB_20928| Best HMM Match : NHL (HMM E-Value=0)
Length = 795
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Frame = +2
Query: 296 ICLKNLEAGEKVKKMPCNHIFHPRCILTWLDK------TNSCPFCRHEMPTDD 436
+C K + A E K +PC H F +C+ L + +CP C + P D
Sbjct: 14 VCPKCMNAYENPKVLPCLHTFCSQCLSEELHRDCEGRLNVTCPKCLRDFPLRD 66
>SB_38572| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0034)
Length = 671
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Frame = +2
Query: 323 EKVKK---MPCNHIFHPRCILTWLDKTNSCPFCRHEMPTD 433
EKVK+ P H+F C+ WL CP CR + D
Sbjct: 108 EKVKEPVVCPNQHVFCSPCLDLWLRTNRYCPTCRTPINQD 147
>SB_11042| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00013)
Length = 499
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +2
Query: 344 CNHIFHPRCILTWLDKTNSCPFCRHEMPTDD 436
C+ IF CI WL +C CR + D
Sbjct: 347 CDQIFCSGCITAWLRNAGACSSCRSVLEVSD 377
>SB_43060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +2
Query: 218 LTSACIERGSTKIQDVVIENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKT 394
L+ A IE S + ++ + G P+ + +E K C H FH C+ ++D T
Sbjct: 64 LSEAHIESISLNLHELA--ETRIGSPMLFELIEDSHCFTKTECYHYFHCSCLARYIDHT 120
>SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = +2
Query: 290 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCRHE 421
C +C + L+ C H FH C + + N CP C E
Sbjct: 74 CNLCSRPLDL--PAVHFLCLHSFHQPCFEGYAENDNECPICTPE 115
>SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12)
Length = 893
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 242 GSTKIQDV--VIENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCI 373
GST +D+ +I+ ++ G + + ++ + K NHIFHP CI
Sbjct: 77 GSTDAEDLYLIIKKEESGRNLLILDIRTQAEYAK---NHIFHPSCI 119
>SB_25082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 585
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 272 ENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCRHEM 424
ENQ C ICL+N V + C H+ R T + + CP CR ++
Sbjct: 532 ENQGTQCVICLEN---QRNVVLLNCGHVCSCR---TCAQQIHQCPVCRGDI 576
>SB_41318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = +2
Query: 344 CNHIFHPRCILTWLD--KTN--SCPFCRHEMPT 430
C + H +C W+ +T +CP CRH P+
Sbjct: 52 CGQVCHQQCFWKWIHFHRTEDITCPHCRHAFPS 84
>SB_30389| Best HMM Match : Helicase_C (HMM E-Value=3.3e-21)
Length = 380
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = +2
Query: 236 ERGSTKIQDVVIENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTN---SCP 406
ER ++ V+ + CPICL L+ + C H+F C+ ++ CP
Sbjct: 47 ERLINQLLQVLSSGVSEECPICLDPLDDPSITR---CAHVFCTGCLTDVIENEGLAPRCP 103
Query: 407 FCR 415
CR
Sbjct: 104 MCR 106
>SB_16517| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
Length = 306
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Frame = +2
Query: 290 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWLD---KTN-----SCPFCRHEMPTDD 436
C IC + LE + PC H F C+ TW++ + N SCP CR ++ D
Sbjct: 18 CGICAEVLE---RAVLTPCGHSFCGVCLETWMNAKLEENEKCPASCPSCRADLYQGD 71
>SB_23542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +1
Query: 130 MGNNQIISYILQDFS*ILA*IE----LVQRSGQAYLRLHRKRQYKNTRCCNRKSKERLPN 297
+G N + ++ D S LA E +++ Q Y R ++RQ N+R + KS+ER+P
Sbjct: 19 VGGNYLAKFLSNDESPALAEKERHDKALEKYQQDYGRCQQRRQ-NNSRLASSKSRERVPR 77
Query: 298 MFE 306
E
Sbjct: 78 KAE 80
>SB_14646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 382 PCQNTPW-MENMITRHLFNLFSSF*VLQTYWATFLLIFYYNIL 257
P +N PW + +I H+ ++F ++ +W L FYY I+
Sbjct: 78 PIRNRPWFIGELIRGHVGSMFVFGIYVEGHWIPGTLTFYYGIV 120
>SB_32455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 482 SQNDLDALHIQCLVSSFIIINFLGLLVISGDIN 580
++N + LH+Q V SF+ + GL++I+GD N
Sbjct: 151 NENQVLLLHLQSNVESFLRQHPEGLILIAGDFN 183
>SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)
Length = 877
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Frame = +2
Query: 278 QKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNS----CPFCRHEMPTD 433
Q+ C IC L + +PC H + RCI + S CP C E+P D
Sbjct: 141 QQLACGICHALLR---DARVLPCLHTYCRRCIEDIILHRQSVRAHCPSCNREIPLD 193
>SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)
Length = 1348
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 482 SQNDLDALHIQCLVSSFIIINFLGLLVISGDIN 580
++N + LH+Q V SF+ + GL++I+GD N
Sbjct: 818 NENQVLLLHLQSNVKSFLRQHPEGLILIAGDFN 850
>SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 27.9 bits (59), Expect = 9.3
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Frame = +2
Query: 206 GVAKLTSACIERGSTKIQDVVIENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWL 385
G A +S+ +D N C ICL A + V M C H+F C+ WL
Sbjct: 35 GAASSSSSEPTASHNPSEDPNSANANFECNICLDT--ARDAVISM-CGHLFCWPCLHRWL 91
Query: 386 D---KTNSCPFCR 415
+ + CP C+
Sbjct: 92 ETRPNRSMCPVCK 104
>SB_38103| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 741
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Frame = +2
Query: 344 CNHIFHPRCILTWL----DKTNSCPFCRHEMP 427
C H C W+ K ++CP CRH P
Sbjct: 56 CKQACHYPCFWKWIHYHRSKEDTCPHCRHVFP 87
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,317,251
Number of Sequences: 59808
Number of extensions: 443142
Number of successful extensions: 1215
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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