Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00703
(465 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 31 0.11
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p... 29 0.46
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 0.61
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 28 0.81
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 27 1.1
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 27 1.1
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2... 27 1.4
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 27 1.9
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 27 1.9
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po... 27 1.9
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 25 4.3
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc... 25 4.3
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 25 5.7
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 25 5.7
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5... 25 7.5
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 7.5
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 25 7.5
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 25 7.5
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p... 24 9.9
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 24 9.9
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 24 9.9
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 24 9.9
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 24 9.9
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 24 9.9
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 30.7 bits (66), Expect = 0.11
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Frame = +2
Query: 299 LFNVEEQCQ-RHYTGHTDDVKCLAVHPNKLIVASXQCAGHDRV-DARP--HVRVWNS 457
L++VE R + GH +DV C++ HPN +A+ R+ D R VRV+N+
Sbjct: 471 LWDVEHAAPLRVFVGHQNDVDCVSFHPNAAYLATGSSDHTTRMWDVRTGGTVRVFNA 527
>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 28.7 bits (61), Expect = 0.46
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Frame = +3
Query: 27 NHYYIIQNGRQHPHMPVQ*RRRYNEDVPPRKASCP----TRAQ*PRRLGPCEV 173
NH NG+++P MP + RR+ E+ P K++ P ++ + P+ GP +V
Sbjct: 148 NHEKNSVNGQKNPEMPPK-RRKTEENKKPTKSALPKKEASKKKNPKVKGPVDV 199
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.3 bits (60), Expect = 0.61
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 62 PTHASTMKKTVQ*GCTSAEGQLSYTGPVTKTA 157
PT A T + TV G + EG +YT P T T+
Sbjct: 838 PTAAPTNEPTVTTGTETTEGTATYTEPTTFTS 869
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 27.9 bits (59), Expect = 0.81
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 326 RHYTGHTDDVKCLAVHPNKLIV 391
R + GH DV C+ HPN V
Sbjct: 457 RVFAGHLSDVDCVTFHPNSAYV 478
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 27.5 bits (58), Expect = 1.1
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Frame = +2
Query: 317 QCQRHYTGHTDDVKCLAVHPNKLIVASXQC-------AGHDRVDARPHVRVWNSV 460
+C GHTD V CL L+ S C +G R+ R H NSV
Sbjct: 344 ECISILHGHTDSVLCLTFDSTLLVSGSADCTVKLWHFSGGKRITLRGHTGPVNSV 398
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 27.5 bits (58), Expect = 1.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 320 CQRHYTGHTDDVKCLAVHPN 379
C+ YTGHTD V +AV P+
Sbjct: 530 CKATYTGHTDFVLSVAVSPD 549
>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 683
Score = 27.1 bits (57), Expect = 1.4
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 101 LIVPSSSLYWHVWVLSSILYY 39
+I P +SL WH VLS IL+Y
Sbjct: 651 VIKPDNSLRWHKEVLSWILHY 671
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 26.6 bits (56), Expect = 1.9
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +2
Query: 227 QRLQEQPISLPTGEIVYFVASVVVLFNVEE--QCQRHYTGHTDDVKCLA 367
+R+ +PI P + F + V + +++ +C GH ++VKC+A
Sbjct: 337 RRVAWRPIERPVLAVASFDSVVSINEKIDDDWECTAALEGHENEVKCIA 385
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 26.6 bits (56), Expect = 1.9
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 326 RHYTGHTDDVKCLAVHPNKLIVASXQCAGHDRVDARPHVRVWN 454
RHY GH V L +HP ++ + AG D V RVW+
Sbjct: 241 RHYHGHLSGVYALKLHPTLDVLVT---AGRDAV-----ARVWD 275
>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 278
Score = 26.6 bits (56), Expect = 1.9
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 198 KLEWVYGYRGKDCRSNLYLCPPVRSCTLLH-RSWCYSTWRSNVRGITP 338
+L + + G DC +Y P+ C +LH +W W S++ + P
Sbjct: 51 ELREIIEFVGPDCLRGIYFTEPISQCFVLHVANW--EEW-SSIDSLVP 95
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 25.4 bits (53), Expect = 4.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 320 CQRHYTGHTDDVKCLAVHPNKLIVAS 397
C TGH+ V C A HP++ ++ S
Sbjct: 129 CIAILTGHSHYVMCAAFHPSEDLIVS 154
>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 4.3
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -2
Query: 74 WHVWVLSSILY-YIIVVFFFC 15
W VWV+ + Y Y+ V F +C
Sbjct: 133 WMVWVIRILYYIYVAVSFIYC 153
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 25.0 bits (52), Expect = 5.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 87 RRYNEDVPPRKASCPTRAQ*PRRLGPCEVAPPP 185
RR + PPR+A+ A L P +APPP
Sbjct: 3 RRRSAAPPPRRAAPARSASTAAALPPRTMAPPP 35
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.0 bits (52), Expect = 5.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 338 GHTDDVKCLAVHPNKLIVASXQCAG 412
GH V C++V PNK +A+ G
Sbjct: 52 GHEKSVTCVSVSPNKRWIATSSSDG 76
>SPBC609.04 |caf5||spermine family transmembrane transporter
Caf5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 24.6 bits (51), Expect = 7.5
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 98 IVPSSSLYWHVWVLSSIL-YYIIVVFFF 18
+V + S W W+L I + +IV+FFF
Sbjct: 233 MVVAESWRWQFWLLMMISGFALIVIFFF 260
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 24.6 bits (51), Expect = 7.5
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Frame = +1
Query: 43 YKMDDSTHTCQYNEEDGTMRMYLRGRPVVLHGPSD--QDGLDPAK----SRPHRKTSSNL 204
Y MDDS C + E ++ + L S+ QDG A S+ H +T N
Sbjct: 57 YNMDDSGELCNFELEKDSLESMIHESSTALSAQSNTAQDGDQLASSSTISKDHSETLDNK 116
Query: 205 NGCTDIEAKTAGATY 249
+ I K A ++
Sbjct: 117 LNDSKILIKKASNSF 131
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 24.6 bits (51), Expect = 7.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 335 TGHTDDVKCLAVHPNKLIVAS 397
TGH DVK + HP+K ++AS
Sbjct: 203 TGHGWDVKTVDWHPSKGLLAS 223
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 24.6 bits (51), Expect = 7.5
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +2
Query: 332 YTGHTDDVKCLAVHPN 379
YTGH + + C+A+ P+
Sbjct: 364 YTGHQEPILCMAITPD 379
>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 360
Score = 24.2 bits (50), Expect = 9.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 264 PVGKDIGCSCSLCLYIRT 211
PV + GC C LC Y R+
Sbjct: 88 PVAVEPGCVCRLCDYCRS 105
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 24.2 bits (50), Expect = 9.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 87 FFIVLACVGAVVHFVLYNSGFFF 19
F ++ CVG+V+H +L ++G F
Sbjct: 778 FAFIIGCVGSVIH-LLKSTGIIF 799
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 24.2 bits (50), Expect = 9.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 103 MYLRGRPVVLHGPSDQDGLDPAKSRPHR 186
M RG+ +++ + D +DPA RP R
Sbjct: 402 MESRGQVIIIGATNRPDAVDPALRRPGR 429
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 24.2 bits (50), Expect = 9.9
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +3
Query: 36 YIIQNGRQHPHMPVQ*RRRYNEDV 107
Y+++N +PH+P+ RR+ +D+
Sbjct: 934 YLVEN-MNYPHIPILLTRRFVQDI 956
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 24.2 bits (50), Expect = 9.9
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = +2
Query: 323 QRHYTGHTDDVKCLAVHP--NKLIV 391
+RHY ++C A HP N L+V
Sbjct: 247 ERHYFNQNSKLRCAAFHPTSNLLVV 271
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 24.2 bits (50), Expect = 9.9
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 317 QCQRHYTGHTDDVKCLAVH 373
+C + GH V+CL+VH
Sbjct: 370 RCTNVFIGHKGRVRCLSVH 388
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,150,922
Number of Sequences: 5004
Number of extensions: 46022
Number of successful extensions: 175
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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