Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00703
(465 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0017 - 6131265-6131284,6131654-6131774,6132011-6132146,613... 29 2.4
02_02_0016 - 6118739-6118758,6119116-6119236,6119478-6119613,611... 29 2.4
11_01_0705 - 5795976-5796051,5796450-5796518,5796632-5796780,579... 28 3.2
03_06_0087 - 31551825-31553363 28 3.2
11_05_0033 + 18500092-18501372,18502419-18502826,18502948-185029... 28 4.3
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 28 4.3
03_03_0017 - 13774877-13775005,13775333-13775368,13776147-137762... 28 4.3
12_02_0241 + 16190408-16191103 27 5.6
09_04_0007 - 13641012-13641431,13642220-13642312,13642429-136425... 27 5.6
03_05_0969 + 29283905-29284570,29284862-29284930,29286533-292866... 27 5.6
02_02_0173 - 7433744-7433775,7434002-7434241,7434548-7437410 27 5.6
10_03_0009 + 6976824-6976932,6977305-6977592,6977703-6977851 27 7.4
06_01_0320 - 2320317-2320336,2320791-2320902,2321092-2321236,232... 27 7.4
12_02_1066 + 25785749-25785868,25785953-25786141,25786250-257864... 27 9.8
11_06_0528 - 24681630-24681751,24681911-24682025,24682134-246821... 27 9.8
07_03_1090 + 23891294-23892222,23892317-23892516,23895241-238954... 27 9.8
06_01_0646 + 4678422-4678508,4679042-4679123,4679236-4679327,467... 27 9.8
03_05_0515 - 25102978-25103115,25103678-25104211,25104236-251048... 27 9.8
03_02_0939 + 12571052-12571173,12571219-12571309,12571413-125715... 27 9.8
03_01_0326 + 2535800-2535938,2536891-2536959,2537310-2537375,253... 27 9.8
02_05_0986 - 33334205-33334362,33334487-33334662,33334774-333349... 27 9.8
>02_02_0017 -
6131265-6131284,6131654-6131774,6132011-6132146,
6132423-6132529,6133006-6133099,6133199-6133395,
6134401-6134472,6135128-6135304,6135393-6135467,
6135557-6135697,6136439-6136627,6136969-6137034,
6137118-6137268,6137596-6137664,6138751-6138899,
6138969-6139100,6139198-6139523,6139599-6139635,
6139765-6139803,6140196-6140250,6140363-6140424,
6140512-6140532,6140820-6140822
Length = 812
Score = 28.7 bits (61), Expect = 2.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 332 YTGHTDDVKCLAVHPNKLIVAS 397
+ HTD ++C+AVHP + V S
Sbjct: 108 FEAHTDYIRCVAVHPTQPFVLS 129
>02_02_0016 -
6118739-6118758,6119116-6119236,6119478-6119613,
6119887-6119993,6120316-6120409,6120509-6120705,
6121872-6121943,6122597-6122773,6122862-6122936,
6123027-6123167,6123837-6124025,6124415-6124480,
6124564-6124714,6125040-6125200,6126279-6126410,
6126508-6126833,6126906-6126942,6127056-6127088,
6127500-6127554,6127666-6127753,6127817-6127862
Length = 807
Score = 28.7 bits (61), Expect = 2.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 332 YTGHTDDVKCLAVHPNKLIVAS 397
+ HTD ++C+AVHP + V S
Sbjct: 122 FEAHTDYIRCVAVHPTQPFVLS 143
>11_01_0705 -
5795976-5796051,5796450-5796518,5796632-5796780,
5796875-5797006,5797128-5797450,5798166-5798172,
5799126-5799180,5799685-5799740,5799862-5800029,
5800912-5801097,5801269-5801419,5801515-5801743,
5802277-5802532,5802793-5802894
Length = 652
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 320 CQRHYTGHTDDVKCLAVHPNKLIVASXQCAGHDRVDARPHVRVWNSVS 463
C + GHTD + C+ HP+ I+ + +D VR+WNS++
Sbjct: 564 CVQTLEGHTDCITCVCSHPDLPILLT---GSNDET-----VRLWNSIT 603
>03_06_0087 - 31551825-31553363
Length = 512
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 109 LRGRPVVLHGPSDQDGLDPAKSRPHRKTSSNLN 207
+R R +GP +DG A+ R HR T LN
Sbjct: 62 IRDRYEYFYGPGGRDGFFAARVRAHRSTVVRLN 94
>11_05_0033 +
18500092-18501372,18502419-18502826,18502948-18502990,
18503236-18503282,18504582-18505901
Length = 1032
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 226 PLYPYTHSSLSLFCGGGATSQGPSRLGHWARVGQLAF 116
PL P+ +S S GGG + GP G + Q AF
Sbjct: 48 PLLPFPSASSSRSGGGGGAAGGPRAAGALSSASQPAF 84
>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 216 GYRGKDCRSNLYLCPPVRSCT-LLHRSWCYSTWRSNVRGI 332
GY G++C SN + R CT ++ S C +T + + G+
Sbjct: 1869 GYHGENCTSNELMSGSFRHCTQVVQASLCSTTIQVQMLGV 1908
>03_03_0017 -
13774877-13775005,13775333-13775368,13776147-13776227,
13776935-13777006,13777136-13777219,13777323-13777376,
13777496-13777572,13777949-13778000,13778121-13778207,
13778466-13778520,13778600-13778700,13778800-13778988,
13779561-13779629,13779954-13780056,13780167-13780225,
13780548-13780685,13780803-13780895,13780972-13781043,
13781503-13781601,13781792-13781893
Length = 583
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = -2
Query: 176 RDFAGS-KPSWSLGPCRTTG--LPRRYILIVPSSSL 78
+DF G P W ++TG +PRRY LI+PS+ L
Sbjct: 194 KDFDGIWAPWWYRSVHKSTGFSMPRRYPLIIPSNFL 229
>12_02_0241 + 16190408-16191103
Length = 231
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 206 MGVRI*RQRLQEQPISLPTGEIVYFVASVVVLFNVEEQCQ 325
+G I + ++E+ + LPT E+ V + FN+E Q +
Sbjct: 184 LGKVIEEEMIEEEDVGLPTDELNRRVEDFIARFNMERQLE 223
>09_04_0007 -
13641012-13641431,13642220-13642312,13642429-13642521,
13642607-13642671,13643495-13643565,13643644-13643682,
13644709-13645121
Length = 397
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 120 ASCPTRAQ*PRRLGPCEVAPPPQNKL 197
A P +A+ PRRL C PPP +++
Sbjct: 35 AVAPVKARAPRRLRLCLAVPPPASEM 60
>03_05_0969 +
29283905-29284570,29284862-29284930,29286533-29286631,
29287016-29287324
Length = 380
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 338 GHTDDVKCLAVHPNKLIVASXQCAGHDRV 424
GHTD V ++ HPN+ ++AS G V
Sbjct: 339 GHTDTVIAVSCHPNENMIASGGLDGDKTV 367
>02_02_0173 - 7433744-7433775,7434002-7434241,7434548-7437410
Length = 1044
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -2
Query: 155 PSWSLGPCRTTGLPRRYILIVPSSSLYWHVWVLSSIL-YYIIVVFFF 18
P L C + R++ L++P +++ + +LSSIL Y+++V F
Sbjct: 692 PMDELTVCSASASKRKHKLVIPMLAVFSSIVLLSSILGLYLLIVNVF 738
>10_03_0009 + 6976824-6976932,6977305-6977592,6977703-6977851
Length = 181
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 261 VGKDIGCSCSLCLYIRTPI 205
VGK C CSLC Y R+ +
Sbjct: 141 VGKRFACGCSLCWYGRSEV 159
>06_01_0320 -
2320317-2320336,2320791-2320902,2321092-2321236,
2321353-2321459,2321572-2321665,2321752-2321948,
2322311-2322382,2322504-2322618,2323060-2323176,
2323253-2323344,2323445-2323621,2323746-2323820,
2323911-2324051,2324671-2324859,2325298-2325363,
2325445-2325595,2325718-2325786,2326293-2326441,
2326526-2326657,2326756-2327081,2327167-2327203,
2327926-2327980,2328242-2328309,2328464-2328466
Length = 902
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 332 YTGHTDDVKCLAVHPNKLIVAS 397
+ HTD ++C+AVHP V S
Sbjct: 90 FEAHTDYIRCVAVHPTLPYVLS 111
>12_02_1066 +
25785749-25785868,25785953-25786141,25786250-25786414,
25786649-25786999,25787924-25788001,25788137-25788277,
25788415-25788459,25788597-25788763,25788833-25788911,
25788985-25789067,25789219-25789348,25789432-25789564,
25789955-25790103,25790339-25790534,25791086-25791288
Length = 742
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 341 HTDDVKCLAVHPNKLIVASXQCAG 412
HT ++ LA HP++ IVAS G
Sbjct: 204 HTKNLNTLAFHPSERIVASGDATG 227
>11_06_0528 -
24681630-24681751,24681911-24682025,24682134-24682193,
24682454-24682513,24682606-24682668,24682752-24682798,
24682884-24683049,24683136-24683228,24683306-24683370,
24683462-24683537,24683644-24683709,24684114-24684203,
24684359-24684421,24684548-24684670
Length = 402
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 139 ARVGQLAFRGGTSSLYRLLHCTGM 68
A + A RGG ++L +LL CTG+
Sbjct: 98 AEIAPKALRGGLTTLNQLLVCTGL 121
>07_03_1090 +
23891294-23892222,23892317-23892516,23895241-23895482,
23895771-23896461,23896486-23896562
Length = 712
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 105 VPPRKASCPTRAQ*PRRLGPCEVAPPPQNKL 197
+PP A P + PR + P PPP+ +L
Sbjct: 205 MPPMAAPAPPQTNPPRPVRPPPPPPPPRQRL 235
>06_01_0646 +
4678422-4678508,4679042-4679123,4679236-4679327,
4679441-4679518,4679635-4679696,4680272-4680993,
4681115-4681272
Length = 426
Score = 26.6 bits (56), Expect = 9.8
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +1
Query: 112 RGRPVVLHGPSDQDGLDPAKSRPHRKTSSNLNGCTDIEAKT 234
RG VL + D LDPA RP R G D+E +T
Sbjct: 305 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRT 345
>03_05_0515 -
25102978-25103115,25103678-25104211,25104236-25104880,
25106601-25106711
Length = 475
Score = 26.6 bits (56), Expect = 9.8
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -1
Query: 231 LCLYIRTPIQV*ACFAVGARLRRVQAVLVTGPV*DNWPSAEVHPHCTVFFIVLACVG 61
L + + + + +C+A G RL+ AVL T + P C V F++LA G
Sbjct: 168 LIVVVAIAVALYSCWASGPRLQHATAVLSTSLNAAHLPPT---ASCLVVFVILAAFG 221
>03_02_0939 +
12571052-12571173,12571219-12571309,12571413-12571512,
12571726-12571807,12571897-12571953,12572632-12572713,
12572792-12572884,12573984-12574047,12574161-12574246,
12574329-12574430,12574526-12574609,12574885-12574945,
12575010-12575091,12575173-12575250,12575867-12575931,
12576108-12576185,12576278-12576450
Length = 499
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 326 RHYTGHTDDVKCLAVHP 376
R Y GH V CLA+HP
Sbjct: 262 RSYHGHLSGVYCLALHP 278
>03_01_0326 +
2535800-2535938,2536891-2536959,2537310-2537375,
2537979-2538100,2538501-2538629,2540462-2540569
Length = 210
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -3
Query: 154 RLGHWARVGQLAFRGGTSSLYRLLH 80
+L W GQ FRG TSS YR H
Sbjct: 63 KLTIWDTAGQERFRGITSSYYRGAH 87
>02_05_0986 -
33334205-33334362,33334487-33334662,33334774-33334955,
33335064-33335282,33335407-33335551,33336127-33336188,
33336282-33336359,33336517-33336608,33337086-33337167,
33337519-33337605
Length = 426
Score = 26.6 bits (56), Expect = 9.8
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +1
Query: 112 RGRPVVLHGPSDQDGLDPAKSRPHRKTSSNLNGCTDIEAKT 234
RG VL + D LDPA RP R G D+E +T
Sbjct: 305 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRT 345
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,779,903
Number of Sequences: 37544
Number of extensions: 379335
Number of successful extensions: 1147
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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