Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00703
(465 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21488| Best HMM Match : WD40 (HMM E-Value=3.5e-16) 82 2e-16
SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 2e-09
SB_35684| Best HMM Match : HELP (HMM E-Value=0.17) 49 2e-06
SB_34753| Best HMM Match : WD40 (HMM E-Value=5.3e-20) 49 2e-06
SB_59771| Best HMM Match : WD40 (HMM E-Value=3.9e-09) 46 1e-05
SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0) 33 0.15
SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36) 31 0.62
SB_13379| Best HMM Match : WD40 (HMM E-Value=1.3e-39) 31 0.62
SB_39595| Best HMM Match : WD40 (HMM E-Value=1.10001e-40) 29 1.4
SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19) 29 1.9
SB_55142| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_39605| Best HMM Match : zf-TRAF (HMM E-Value=5.3e-39) 28 3.3
SB_17334| Best HMM Match : WD40 (HMM E-Value=3.1e-30) 28 3.3
SB_1830| Best HMM Match : DUF331 (HMM E-Value=3.5) 28 3.3
SB_13993| Best HMM Match : WD40 (HMM E-Value=2.6e-10) 28 3.3
SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 4.4
SB_12978| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.8e-24) 27 5.8
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_6531| Best HMM Match : EGF_2 (HMM E-Value=0.0016) 27 5.8
SB_57808| Best HMM Match : WD40 (HMM E-Value=2.5e-22) 27 7.7
SB_44731| Best HMM Match : WD40 (HMM E-Value=1.1e-11) 27 7.7
SB_28528| Best HMM Match : TUDOR (HMM E-Value=0.34) 27 7.7
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_22957| Best HMM Match : EGF (HMM E-Value=7e-39) 27 7.7
SB_45790| Best HMM Match : SERTA (HMM E-Value=2.8e-07) 27 7.7
SB_34673| Best HMM Match : UK (HMM E-Value=0.6) 27 7.7
SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_2152| Best HMM Match : EGF (HMM E-Value=0) 27 7.7
>SB_21488| Best HMM Match : WD40 (HMM E-Value=3.5e-16)
Length = 675
Score = 82.2 bits (194), Expect = 2e-16
Identities = 37/67 (55%), Positives = 47/67 (70%)
Frame = +2
Query: 260 TGEIVYFVASVVVLFNVEEQCQRHYTGHTDDVKCLAVHPNKLIVASXQCAGHDRVDARPH 439
TGE+ YF A++VVL+N+++ QRHYT HTDDVK LAVHP+ +AS Q AGH+ V H
Sbjct: 148 TGELAYFTAAIVVLYNLKKHTQRHYTQHTDDVKSLAVHPDGRTIASGQVAGHEEVQGEDH 207
Query: 440 VRVWNSV 460
R SV
Sbjct: 208 GRYIVSV 214
Score = 31.1 bits (67), Expect = 0.47
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3
Query: 213 YGYRGKDCRSNL 248
YGYRGKDCR+NL
Sbjct: 131 YGYRGKDCRNNL 142
>SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1483
Score = 59.3 bits (137), Expect = 2e-09
Identities = 29/66 (43%), Positives = 42/66 (63%)
Frame = +2
Query: 260 TGEIVYFVASVVVLFNVEEQCQRHYTGHTDDVKCLAVHPNKLIVASXQCAGHDRVDARPH 439
TG+IVY VA++ +++N + QR Y HTDD+ CLA+HP K +A+ Q G D P
Sbjct: 451 TGDIVYHVAALGIVYNRDTHKQRFYNAHTDDILCLAIHPVKDFIATGQ-VGRD-----PA 504
Query: 440 VRVWNS 457
V VW++
Sbjct: 505 VHVWDA 510
Score = 41.5 bits (93), Expect = 3e-04
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = +3
Query: 84 RRRYNEDVPPRKASCPTRAQ*PRRLGPCEVAPPPQNKLKLEWVYGYRGKDCRSNLY 251
R Y ED+P K Q + PP + L+LE+V+GYRG DCR+N++
Sbjct: 393 RTIYREDLPALKEKMKLSKQ-GKADDAAPRQKPPNDGLRLEFVFGYRGYDCRNNVF 447
Score = 39.9 bits (89), Expect = 0.001
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 254 LPTGEIVYFVASVVVLFNVEEQCQRHYTGHTDDVKCLAVH 373
LP+G+I+Y A ++ + Q Y HTDD+ CLAV+
Sbjct: 1039 LPSGDIIYHAAGAGIVLSTANGVQSFYLEHTDDIICLAVN 1078
Score = 31.1 bits (67), Expect = 0.47
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 195 LKLEWVYGYRGKDCRSNLYLCP 260
L LE+++GYRG D R NL+ P
Sbjct: 1019 LSLEFIHGYRGFDTRDNLHYLP 1040
>SB_35684| Best HMM Match : HELP (HMM E-Value=0.17)
Length = 409
Score = 48.8 bits (111), Expect = 2e-06
Identities = 20/48 (41%), Positives = 32/48 (66%)
Frame = +2
Query: 260 TGEIVYFVASVVVLFNVEEQCQRHYTGHTDDVKCLAVHPNKLIVASXQ 403
+ E+V+ VA++ +++N + QR Y GHTDD+ CL +H K VA+ Q
Sbjct: 362 SNEMVFHVAALGIVYNKQNHQQRFYMGHTDDILCLTIHDVKDFVATGQ 409
>SB_34753| Best HMM Match : WD40 (HMM E-Value=5.3e-20)
Length = 645
Score = 48.8 bits (111), Expect = 2e-06
Identities = 20/48 (41%), Positives = 32/48 (66%)
Frame = +2
Query: 260 TGEIVYFVASVVVLFNVEEQCQRHYTGHTDDVKCLAVHPNKLIVASXQ 403
+ E+V+ VA++ +++N + QR Y GHTDD+ CL +H K VA+ Q
Sbjct: 16 SNEMVFHVAALGIVYNKQNHQQRFYMGHTDDILCLTIHDVKDFVATGQ 63
>SB_59771| Best HMM Match : WD40 (HMM E-Value=3.9e-09)
Length = 204
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = +2
Query: 269 IVYFVASVVVLFNVEEQCQRHYTGHTDDVKCLAVHPNKLIVASXQ 403
+V+ VA++ +++N + QR Y GHTDD+ CL +H K VA+ Q
Sbjct: 1 MVFHVAALGIVYNKQNHQQRFYMGHTDDILCLTIHDVKDFVATGQ 45
>SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)
Length = 1498
Score = 32.7 bits (71), Expect = 0.15
Identities = 15/64 (23%), Positives = 30/64 (46%)
Frame = +2
Query: 263 GEIVYFVASVVVLFNVEEQCQRHYTGHTDDVKCLAVHPNKLIVASXQCAGHDRVDARPHV 442
G Y S+VV+ ++ Q+H GH ++V + + L++AS +G +
Sbjct: 505 GLFAYTSGSIVVIEDLHSGGQKHLIGHVEEVSTITCQNDGLVLAS--ASGSSETSESSQI 562
Query: 443 RVWN 454
+W+
Sbjct: 563 YIWD 566
>SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36)
Length = 885
Score = 30.7 bits (66), Expect = 0.62
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +2
Query: 338 GHTDDVKCLAVHPNKL-IVASXQCAG 412
GHTD V CL+ HP L ++ S C G
Sbjct: 64 GHTDGVNCLSRHPRSLSVLLSGSCDG 89
>SB_13379| Best HMM Match : WD40 (HMM E-Value=1.3e-39)
Length = 574
Score = 30.7 bits (66), Expect = 0.62
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +2
Query: 269 IVYFVASVVVLFNVEEQCQRHYTGHTDDVKCLAVHPNKLIVAS 397
++Y + + VV+ ++ Q +GHTD+V C+AV + +AS
Sbjct: 41 LIYPLGNTVVIEQIKTGKQSCLSGHTDNVTCVAVSKSGRYLAS 83
>SB_39595| Best HMM Match : WD40 (HMM E-Value=1.10001e-40)
Length = 260
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 320 CQRHYTGHTDDVKCLAV-HPNKLIVASXQC 406
CQ +TGHTD V+ LAV P + I S C
Sbjct: 178 CQSTFTGHTDCVRGLAVISPVEFISCSNDC 207
>SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2644
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -2
Query: 182 WGRDFAGSKPSWSLGPC--RTTGLPRRYILIVPSSS 81
W R+ +G+ PSW GP TTG P + + + +SS
Sbjct: 1554 WTRN-SGTTPSWQTGPSTDHTTGSPLGHYMFIETSS 1588
>SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)
Length = 1199
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 338 GHTDDVKCLAVHPNK-LIVASXQCAGHDRVDARPHVRVWNS 457
GH+D+V LAVHP+K L +++ A+ H W++
Sbjct: 614 GHSDEVPALAVHPSKDLFISASMDKFAYLWSAKDHKTAWST 654
>SB_55142| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 500
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -3
Query: 184 GGGATSQGPSRLGHWARVGQLAFRGGTSSLYRLLHCTGMCGCC 56
GGG S S +WA +G+ + Y L++C CG C
Sbjct: 86 GGGGCSDHHSSCSYWASIGEC----NKNPNYMLVNCKKSCGKC 124
>SB_39605| Best HMM Match : zf-TRAF (HMM E-Value=5.3e-39)
Length = 684
Score = 28.3 bits (60), Expect = 3.3
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 99 EDVPPRKASCPT-RAQ*PRRLGPCEVAPPPQNKLKLEWVYGYRGKDCRSNLYLCP 260
EDV SCP+ P C VA P+ +++L + +DCRSN+ CP
Sbjct: 407 EDVETHHQSCPSFPLSCPNN---CGVAQIPRGEVEL-----HLSRDCRSNIMQCP 453
>SB_17334| Best HMM Match : WD40 (HMM E-Value=3.1e-30)
Length = 1292
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 332 YTGHTDDVKCLAVHPNKLIVASXQC 406
Y+GHT DV L+++PN S C
Sbjct: 109 YSGHTGDVMSLSLNPNNQSFVSGAC 133
>SB_1830| Best HMM Match : DUF331 (HMM E-Value=3.5)
Length = 326
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = +3
Query: 147 PRRLGPCEVAPPPQNKLKLEWVYGYRGKDCRSNLYLCP 260
PR CE PPPQNKL W+ K S+ L P
Sbjct: 127 PRNTHGCET-PPPQNKLPDIWISKVDAKRRESDHKLMP 163
>SB_13993| Best HMM Match : WD40 (HMM E-Value=2.6e-10)
Length = 73
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 320 CQRHYTGHTDDVKCLAVHPNKLIVAS 397
C+R Y GH + CL KL AS
Sbjct: 20 CKRTYKGHESAINCLVASKGKLYTAS 45
>SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 928
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +2
Query: 326 RHYTGHTDDVKCLAVHPNKLIVASXQCAGHDRV 424
RH HTDD + NK S HDRV
Sbjct: 580 RHMISHTDDKPYVCTKCNKAFAYSASLVKHDRV 612
>SB_12978| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.8e-24)
Length = 1592
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 82 EEDGTMRMYLRGRPVVLHGPSDQDGLDPAKSRPHRKTSSNLNGC 213
EE T Y+ P Q G DP ++R +RK +++GC
Sbjct: 1549 EETFTSADYMERNPEWSVFGHSQRGFDPEETRWYRKNRKDISGC 1592
>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1516
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = +2
Query: 317 QCQRHYTGHTDDVKCLAVHPNKLIVASXQCAGHDRVDAR 433
+C Y GH D V+C P + A + DAR
Sbjct: 1280 KCDARYRGHRDKVRCALPWPPRQSATRATVATETKCDAR 1318
>SB_6531| Best HMM Match : EGF_2 (HMM E-Value=0.0016)
Length = 407
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +3
Query: 93 YNEDVPPRKASCPTRAQ*PRRLGPCEVAPPPQNKLKLEWVYGYRGKDCRSNLYLCPPVRS 272
Y ED+P K +CP + + G C V + K GY GK+C + C +R+
Sbjct: 89 YMEDIPNSKPTCPWTSP-CKNGGTCYV---ENHASKCICPKGYNGKECENGPPDCETLRA 144
>SB_57808| Best HMM Match : WD40 (HMM E-Value=2.5e-22)
Length = 195
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 338 GHTDDVKCLAVHPNKLIVAS 397
GH DVKC+ HP+K ++ S
Sbjct: 153 GHGADVKCIDWHPHKSLLVS 172
>SB_44731| Best HMM Match : WD40 (HMM E-Value=1.1e-11)
Length = 256
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 320 CQRHYTGHTDDVKCLAVHPNKLIVASXQCAGHDRV 424
C R GHTD + ++ P+ ++AS G RV
Sbjct: 173 CSRSVRGHTDTIHTMSFSPDGTLLASGGMDGAVRV 207
>SB_28528| Best HMM Match : TUDOR (HMM E-Value=0.34)
Length = 736
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = +2
Query: 65 THASTMKKTVQ*GCTSAEGQLSYTG-----PVTKTAWTLRSRAPTAKQ 193
THA +K T++ AEGQ G +T A+ L++RA T Q
Sbjct: 388 THALFLKNTLEFNLIMAEGQQKMFGYIKNLNITSAAFDLKNRAATKSQ 435
>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2162
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 216 GYRGKDCRSNLYLCPP 263
GYRGK+C+ N+ C P
Sbjct: 385 GYRGKNCQENIDECDP 400
>SB_22957| Best HMM Match : EGF (HMM E-Value=7e-39)
Length = 201
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 216 GYRGKDCRSNLYLCPP 263
GYRGK+C+ N+ C P
Sbjct: 179 GYRGKNCQENIDECDP 194
>SB_45790| Best HMM Match : SERTA (HMM E-Value=2.8e-07)
Length = 1213
Score = 27.1 bits (57), Expect = 7.7
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 251 SLPTGEIVYFVASVVV--LFNVEEQCQRH-YTGHTDDVKCLAVHPNKLIVASXQC 406
+LP+G + YF V+ LF++ H TGHT+ V +A HP + V C
Sbjct: 222 TLPSG-LKYFSLYVITAYLFDIRGTSFSHRLTGHTEVVSDVAFHPARPEVLLRYC 275
>SB_34673| Best HMM Match : UK (HMM E-Value=0.6)
Length = 641
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +1
Query: 118 RPVVLHGPSDQDGLDPAKSRPHRKTSSN 201
RP L G D DG D S+P + N
Sbjct: 431 RPTELEGDEDDDGFDDKTSKPQHSEAIN 458
>SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1798
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 71 ASTMKKTVQ*GCTSAEGQLSYTGPVTKTAWTLRSRAPTAK 190
A T K T T + +L YT P+T T T ++APT +
Sbjct: 565 AQTPKYTTPAKRTIIQEELRYTKPLTTTTPTTPTQAPTTR 604
>SB_2152| Best HMM Match : EGF (HMM E-Value=0)
Length = 1603
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 216 GYRGKDCRSNLYLCPP 263
GYRGK+C+ N+ C P
Sbjct: 203 GYRGKNCQENIDECDP 218
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,617,566
Number of Sequences: 59808
Number of extensions: 401435
Number of successful extensions: 1202
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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