Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00703
         (465 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92833-2|CAB07379.1|  891|Caenorhabditis elegans Hypothetical pr...    71   3e-13
Z75953-2|CAB00099.1|  257|Caenorhabditis elegans Hypothetical pr...    33   0.10 
U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical pr...    31   0.31 
Z81015-2|CAB02660.1|  411|Caenorhabditis elegans Hypothetical pr...    31   0.41 
Z73978-3|CAA98293.1|  501|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z74030-18|CAA98448.1|  494|Caenorhabditis elegans Hypothetical p...    28   3.8  
Z73970-6|CAA98247.1|  494|Caenorhabditis elegans Hypothetical pr...    28   3.8  
AL032637-21|CAA21618.2|  612|Caenorhabditis elegans Hypothetical...    28   3.8  
U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer am...    27   5.0  
U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer am...    27   5.0  
AF047651-2|AAL13318.1|  486|Caenorhabditis elegans Hypothetical ...    27   5.0  
AF047651-1|AAK67207.1|  484|Caenorhabditis elegans Hypothetical ...    27   5.0  
Z81595-2|CAB04749.1|  527|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AF000265-5|AAK68197.1|  331|Caenorhabditis elegans Hypothetical ...    27   6.6  
Z81541-5|CAE17831.2|  103|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U39850-9|AAM45371.1|  440|Caenorhabditis elegans Polyq (poly glu...    27   8.8  

>Z92833-2|CAB07379.1|  891|Caenorhabditis elegans Hypothetical
           protein F38A6.2 protein.
          Length = 891

 Score = 71.3 bits (167), Expect = 3e-13
 Identities = 32/56 (57%), Positives = 44/56 (78%), Gaps = 2/56 (3%)
 Frame = +2

Query: 254 LPTGEIVYFVASVVVLFNV--EEQCQRHYTGHTDDVKCLAVHPNKLIVASXQCAGH 415
           LPTGE+V+F A++VVL N+  E++ QR Y GHT DVKC+ +HPNK++VAS Q + H
Sbjct: 300 LPTGELVFFSANLVVLMNITGEDRSQRIYHGHTCDVKCITLHPNKILVASGQSSCH 355



 Score = 36.7 bits (81), Expect = 0.008
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +3

Query: 180 PPQNKLKLEWVYGYRGKDCRSNLYLCP 260
           PP  K+ L+ VY YRGKD RSN+ + P
Sbjct: 275 PPTMKVTLKHVYSYRGKDVRSNIEMLP 301



 Score = 27.5 bits (58), Expect = 5.0
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = +1

Query: 58  STHTCQYNEEDGTMRMYLRGRPVVLHGPSDQDGLDP 165
           +  TCQ++   G + +++ G+ V +  P+  + +DP
Sbjct: 234 NNRTCQFSNGSGHLPIFIGGKTVQVPVPTGYENMDP 269


>Z75953-2|CAB00099.1|  257|Caenorhabditis elegans Hypothetical
           protein F57F5.3 protein.
          Length = 257

 Score = 33.1 bits (72), Expect = 0.10
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -2

Query: 149 WSLGPCRTTGLPRRYILIVPSSSLYWHVWVLSSILYYIIVVFFF 18
           W LG    T LP  ++L++    + + V+ LS  ++Y+I +F F
Sbjct: 207 WPLGVSDLTSLPTDFVLMMQYLLIAYSVFSLSLFIFYVITLFCF 250


>U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical
           protein T10F2.4 protein.
          Length = 492

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 281 VASVVVLFNVE-EQCQRHYTGHTDDVKCLAVHPNKLIVASXQCAGHDRV 424
           +   VVL++ E EQ  + + GH   +  + +HP+ +   S     H RV
Sbjct: 229 IDKTVVLYDYEKEQVMQTFKGHNKKINAVVLHPDNITAISASADSHIRV 277


>Z81015-2|CAB02660.1|  411|Caenorhabditis elegans Hypothetical
           protein C11E4.3 protein.
          Length = 411

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -1

Query: 123 WPSAEVHPH-CTVFFI-VLACVGAVVHFVLYNSGFF 22
           W SAEV+   C  F++ V  CV AV+HF+ ++  FF
Sbjct: 366 WNSAEVNEEVCFRFYVYVCVCVCAVLHFLPHSFSFF 401


>Z73978-3|CAA98293.1|  501|Caenorhabditis elegans Hypothetical
           protein ZC302.2a protein.
          Length = 501

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 287 SVVVLFNV-EEQCQRHYTGHTDDVKCLAVHPNKLIVASXQCAGHDRVDARPHVRVWN 454
           + V +F+V    C R   GHT+ V C + +P   ++AS   AG D       VRVW+
Sbjct: 277 TTVKIFDVISGACLRTMRGHTNYVFCCSFNPQSSLIAS---AGFDET-----VRVWD 325


>Z74030-18|CAA98448.1|  494|Caenorhabditis elegans Hypothetical
           protein D1054.15 protein.
          Length = 494

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 326 RHYTGHTDDVKCLAVHPN 379
           RHY GH   V+ L+VHP+
Sbjct: 262 RHYHGHLSAVQALSVHPS 279


>Z73970-6|CAA98247.1|  494|Caenorhabditis elegans Hypothetical
           protein D1054.15 protein.
          Length = 494

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 326 RHYTGHTDDVKCLAVHPN 379
           RHY GH   V+ L+VHP+
Sbjct: 262 RHYHGHLSAVQALSVHPS 279


>AL032637-21|CAA21618.2|  612|Caenorhabditis elegans Hypothetical
           protein Y43F8C.3 protein.
          Length = 612

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +1

Query: 64  HTCQYNEEDGTMRM---YLRGRPVVLHGPSDQDGLDPAKSRPHRKTSSNLNGC 213
           H CQY +EDG + M   ++    +V     D D LD +K +  R     L  C
Sbjct: 386 HLCQYLDEDGALLMEINWIENHDMVSDDEEDDD-LDFSKLQKPRLKMPGLTNC 437


>U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer
            amphipath transporters(subfamily iv p-type atpase)
            protein 4, isoform a protein.
          Length = 1212

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 457  GVPHADMRPSINPVVAGALXAGYDQLVRVNRQAFDVIG 344
            GV +  +  S+ PVV G L   YD    +N+    VIG
Sbjct: 1029 GVIYPIIFTSVQPVVVGVLDQDYDDQTLMNKPELYVIG 1066


>U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer
            amphipath transporters(subfamily iv p-type atpase)
            protein 4, isoform b protein.
          Length = 1454

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 457  GVPHADMRPSINPVVAGALXAGYDQLVRVNRQAFDVIG 344
            GV +  +  S+ PVV G L   YD    +N+    VIG
Sbjct: 1029 GVIYPIIFTSVQPVVVGVLDQDYDDQTLMNKPELYVIG 1066


>AF047651-2|AAL13318.1|  486|Caenorhabditis elegans Hypothetical
           protein C05D2.10b protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 320 CQRHYTGHTDDVKCLAVHPN 379
           C   YTGHT  V C+A+  N
Sbjct: 174 CLATYTGHTGSVNCVAISNN 193


>AF047651-1|AAK67207.1|  484|Caenorhabditis elegans Hypothetical
           protein C05D2.10a protein.
          Length = 484

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 320 CQRHYTGHTDDVKCLAVHPN 379
           C   YTGHT  V C+A+  N
Sbjct: 172 CLATYTGHTGSVNCVAISNN 191


>Z81595-2|CAB04749.1|  527|Caenorhabditis elegans Hypothetical
           protein T22H2.2 protein.
          Length = 527

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 107 YILIVPSSSLYWHVWVLS-SILYYIIVVFFF 18
           Y+L+  +  ++ H W LS  I +Y ++ F F
Sbjct: 85  YLLLTKAIDIFTHTWSLSVEIQFYFLIPFIF 115


>AF000265-5|AAK68197.1|  331|Caenorhabditis elegans Hypothetical
           protein C18E3.5 protein.
          Length = 331

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 293 VVLFNVEEQ-CQRHYTGHTDDVKCLAVHPNKLIVASXQCAGHDR 421
           V ++N + + C     GH   V C A+HP + I+ S   AG D+
Sbjct: 279 VYVWNAKSRACVYKLPGHLGSVNCTALHPTQQILLS---AGSDK 319


>Z81541-5|CAE17831.2|  103|Caenorhabditis elegans Hypothetical
          protein F48F5.6 protein.
          Length = 103

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 88 LLHCTGMCGCCR 53
          L++CT  CGCCR
Sbjct: 33 LMYCTMSCGCCR 44


>U39850-9|AAM45371.1|  440|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform f
           protein.
          Length = 440

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 97  MRMYLRGRPVVLHGPSDQDGLDPAKSRPH 183
           M  Y +  PV++H  + Q  L P +S PH
Sbjct: 1   MSTYYQSAPVLVHAHAYQPPLSPPQSPPH 29


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,475,243
Number of Sequences: 27780
Number of extensions: 284244
Number of successful extensions: 1027
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)