Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00703
         (465 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28690.1 68418.m03520 expressed protein                             29   1.2  
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea...    28   3.6  
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea...    27   4.7  
At1g71090.1 68414.m08204 auxin efflux carrier family protein con...    27   4.7  
At5g12150.1 68418.m01426 pleckstrin homology (PH) domain-contain...    27   6.2  
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul...    27   6.2  
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1...    27   6.2  
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul...    27   8.3  
At3g18860.2 68416.m02396 transducin family protein / WD-40 repea...    27   8.3  
At3g18860.1 68416.m02395 transducin family protein / WD-40 repea...    27   8.3  
At2g26490.1 68415.m03178 transducin family protein / WD-40 repea...    27   8.3  

>At5g28690.1 68418.m03520 expressed protein
          Length = 192

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 232 SLPLYPYTHS-SLSLFCGGGATSQGPSRLGHWAR 134
           S+P  P T S SL + C G    Q   RL HWA+
Sbjct: 149 SIPCSPKTDSDSLKILCPGDNPQQVKQRLRHWAQ 182


>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to WD40-repeat containing protein Ciao 1
           (SP:O76071) [Homo sapiens]
          Length = 352

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 296 VLFNVEEQCQRHYTGHTDDVKCLAVHPNKLIVAS 397
           VL   E  C    TGHT DVK +  HP   ++ S
Sbjct: 147 VLEGNEYDCAAVLTGHTQDVKMVQWHPTMDVLFS 180


>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400); G
           protein beta subunit-like protein, Schistosoma mansoni,
           gb:U30261
          Length = 321

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 236 QEQPISLPTGEIVYFVASVVVLFNVEE-QCQRHYTGHTDDVKCLAVHPNKLIVASXQCAG 412
           +++P  L TG +       V L+  +E    R  TGH+  V  LA HP+ +I AS     
Sbjct: 27  EDRPALLLTGSL----DETVKLWRPDELDLVRTNTGHSLGVAALAAHPSGIIAASSSIDS 82

Query: 413 HDRV 424
             RV
Sbjct: 83  FVRV 86


>At1g71090.1 68414.m08204 auxin efflux carrier family protein
           contains auxin efflux carrier domain, Pfam:PF03547
          Length = 457

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 113 RRYILIVPSSSLYW-HVWVLSSILYYIIVVF 24
           R Y +   S+ L+W H++ L S+ +YI++ F
Sbjct: 415 RGYAVREASALLFWQHIFALLSLTFYIVIFF 445


>At5g12150.1 68418.m01426 pleckstrin homology (PH) domain-containing
           protein / RhoGAP domain-containing protein weak
           similarity to glucocorticoid receptor DNA binding factor
           1 [Canis familiaris] GI:23266717; contains Pfam profiles
           PF00169: PH domain, PF00620: RhoGAP domain
          Length = 827

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 297 CYSTWRSNVRGITPATPMTSNAWRFTLTS 383
           CY + R  +  +TP+TP+T  A R+T ++
Sbjct: 495 CYQSGREAIPSVTPSTPLT--ALRYTTSA 521


>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
           regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
           phosphatases pleiotropic regulator PRL2 {Arabidopsis
           thaliana}, GB:Q39190 from [Arabidopsis thaliana];
           contains Pfam PF00400: WD domain, G-beta repeat (7
           copies, 1 weak)
          Length = 479

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +2

Query: 326 RHYTGHTDDVKCLAVHPNKLIVASXQCAGHDRVDARPHVRVWN 454
           R Y GH   V CLA+HP   +V +    G D V      RVW+
Sbjct: 248 RSYHGHLHGVYCLALHPTLDVVLT---GGRDSV-----CRVWD 282


>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
           similar to 26S proteasome ATPase subunit GI:1395190 from
           [Spinacia oleracea]
          Length = 426

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +1

Query: 112 RGRPVVLHGPSDQDGLDPAKSRPHRKTSSNLNGCTDIEAKT 234
           RG   VL   +  D LDPA  RP R       G  D+E++T
Sbjct: 305 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRT 345


>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
           regulator 1 (PRL1) identical to PP1/PP2A phosphatases
           pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
           thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
           contains Pfam PF00400: WD domain, G-beta repeat (7
           copies)
          Length = 486

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 326 RHYTGHTDDVKCLAVHP 376
           R Y GH   V CLA+HP
Sbjct: 254 RSYHGHLSGVYCLALHP 270


>At3g18860.2 68416.m02396 transducin family protein / WD-40 repeat
           family protein contains seven G-protein beta WD-40
           repeats; similar to phospholipase a-2-activating protein
           SP:P27612 from [Mus musculus]
          Length = 760

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 248 ISLPTGEIVYFVASVVVLFNVEEQCQRHYTGHTDDVKCLAVHPN 379
           I LP+GE+V   +   +     +   +  +GHTD V+ LAV P+
Sbjct: 158 IRLPSGELVSGSSDASLKLWKGKTSLQTLSGHTDTVRGLAVMPD 201


>At3g18860.1 68416.m02395 transducin family protein / WD-40 repeat
           family protein contains seven G-protein beta WD-40
           repeats; similar to phospholipase a-2-activating protein
           SP:P27612 from [Mus musculus]
          Length = 760

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 248 ISLPTGEIVYFVASVVVLFNVEEQCQRHYTGHTDDVKCLAVHPN 379
           I LP+GE+V   +   +     +   +  +GHTD V+ LAV P+
Sbjct: 158 IRLPSGELVSGSSDASLKLWKGKTSLQTLSGHTDTVRGLAVMPD 201


>At2g26490.1 68415.m03178 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           related to En/Spm transposon family of maize
          Length = 465

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 320 CQRHYTGHTDDVKCLAVHPNK 382
           C    TGHT  VKCLAV  ++
Sbjct: 372 CLSVLTGHTGPVKCLAVEADR 392


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,811,218
Number of Sequences: 28952
Number of extensions: 267739
Number of successful extensions: 814
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)