Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00701
(411 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 90 8e-19
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 82 2e-16
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086) 73 9e-14
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 6e-09
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15) 50 1e-06
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8) 50 1e-06
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 3e-05
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6) 42 3e-04
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1) 40 8e-04
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.16
SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23) 29 1.1
SB_6909| Best HMM Match : UPAR_LY6 (HMM E-Value=0.017) 29 1.5
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 89.8 bits (213), Expect = 8e-19
Identities = 40/74 (54%), Positives = 57/74 (77%)
Frame = +1
Query: 31 RTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPAAKVLVE 210
+ +++ +I+K+SLGP G+DKM+V G+VTVTNDGATIL M+EV+H AK++VE
Sbjct: 32 KQSHILAARAVASILKTSLGPKGMDKMMVSPDGEVTVTNDGATILGMMEVDHQIAKLMVE 91
Query: 211 LAQLQDEEVGDGTT 252
L++ QD E+GDGTT
Sbjct: 92 LSKSQDNEIGDGTT 105
>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 531
Score = 82.2 bits (194), Expect = 2e-16
Identities = 38/64 (59%), Positives = 54/64 (84%), Gaps = 2/64 (3%)
Frame = +1
Query: 67 NIVKSSLGPVGLDKMLVD--DIGDVTVTNDGATILKMLEVEHPAAKVLVELAQLQDEEVG 240
++VKS+LGP G+DK+L G++ VTNDGATILK + +++PAAK+LVEL+++QD+EVG
Sbjct: 34 DLVKSTLGPKGMDKILQSFGQNGNIQVTNDGATILKSIGIDNPAAKILVELSKVQDDEVG 93
Query: 241 DGTT 252
DGTT
Sbjct: 94 DGTT 97
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +3
Query: 255 VVIIAAELLKNADELVKTKIHPTSIISGXRXAC*EAVK 368
V ++ +ELLK A++LV KIHP +I++G R + A K
Sbjct: 99 VTVLTSELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEK 136
>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
Length = 724
Score = 72.9 bits (171), Expect = 9e-14
Identities = 33/74 (44%), Positives = 50/74 (67%)
Frame = +1
Query: 13 SCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPA 192
S G P N+ + V+++LGP G+DK++VD G T++NDGATI+ +L++ HPA
Sbjct: 651 SQGIPQLISNIDACQFIADAVRTTLGPRGMDKLIVDGRGKATISNDGATIINLLDIVHPA 710
Query: 193 AKVLVELAQLQDEE 234
AK LV++A+ QD E
Sbjct: 711 AKTLVDIAKSQDAE 724
>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 56.8 bits (131), Expect = 6e-09
Identities = 23/38 (60%), Positives = 33/38 (86%)
Frame = +1
Query: 139 VTNDGATILKMLEVEHPAAKVLVELAQLQDEEVGDGTT 252
+TNDG IL+ ++V+HPAAK ++E+++ QDEEVGDGTT
Sbjct: 1 MTNDGNAILREIQVKHPAAKSMIEISRTQDEEVGDGTT 38
>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
Length = 563
Score = 49.6 bits (113), Expect = 1e-06
Identities = 23/61 (37%), Positives = 36/61 (59%)
Frame = +1
Query: 70 IVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPAAKVLVELAQLQDEEVGDGT 249
I+K S GP GLD ML G++ +TN G+ IL+ L + +P +++VE A+ G G
Sbjct: 15 ILKKSFGPNGLDVMLRSSSGNILITNSGSMILESLTMGNPTERMIVEAARSLSGRTGSGA 74
Query: 250 T 252
+
Sbjct: 75 S 75
>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
Length = 186
Score = 49.6 bits (113), Expect = 1e-06
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Frame = +1
Query: 28 VRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATI--LKMLEVE-HPAAK 198
+R N+ + +++SLGP G+DKM+ GDVT+TNDGATI + +++E P K
Sbjct: 25 IRMTNITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDGATIKLIDTVDLEGGPVGK 84
Query: 199 VLVELAQLQDEEVGD 243
+V A + G+
Sbjct: 85 PVVPAALMNRPTRGE 99
>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 44.8 bits (101), Expect = 3e-05
Identities = 17/27 (62%), Positives = 25/27 (92%)
Frame = +1
Query: 172 LEVEHPAAKVLVELAQLQDEEVGDGTT 252
++V+HPAAK ++E+++ QDEEVGDGTT
Sbjct: 209 IQVKHPAAKSMIEISRTQDEEVGDGTT 235
>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
Length = 278
Score = 41.5 bits (93), Expect = 3e-04
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Frame = +1
Query: 73 VKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEV----EHPAAKVLVELAQLQDEEVG 240
V +LGP G + ++ G +T DG T+ K +E+ ++ A+++ ++A +EE G
Sbjct: 83 VAVTLGPKGKNVIIEQSFGGPKITKDGVTVAKAIELKDKYQNIGARLVQDVANNTNEEAG 142
Query: 241 DGTT 252
DGTT
Sbjct: 143 DGTT 146
>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
Length = 144
Score = 39.9 bits (89), Expect = 8e-04
Identities = 18/38 (47%), Positives = 27/38 (71%)
Frame = +3
Query: 255 VVIIAAELLKNADELVKTKIHPTSIISGXRXAC*EAVK 368
V ++A+ELLK A++LV KIHP +I++G R + A K
Sbjct: 17 VTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEK 54
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/14 (71%), Positives = 14/14 (100%)
Frame = +1
Query: 211 LAQLQDEEVGDGTT 252
L+++QD+EVGDGTT
Sbjct: 2 LSKVQDDEVGDGTT 15
>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 32.3 bits (70), Expect = 0.16
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 175 EVEHPAAKVLVELAQLQDEEVGDGTT 252
+++HP A ++ +A QD+ GDGTT
Sbjct: 170 QIQHPTASLIARVATAQDDITGDGTT 195
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 258 VIIAAELLKNADELVKTKIHPTSIISGXRXAC*EAVKYIPD 380
V+I ELLK AD V +HP + G A +A++ + +
Sbjct: 198 VMIIGELLKQADLYVSEGLHPRLVTEGFEVAKKKALEVLEE 238
>SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)
Length = 300
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Frame = -1
Query: 150 IVSDCNIPNIVNQHLIQTNWPKGALYYVCYSRCCHYVLCSHWVSA----GSCPC 1
+ +PN + + T PKG Y C +C + C H + G+C C
Sbjct: 70 VTQGTTVPNAIEGEICNTRCPKGYYGYGCSKKCSN---CQHGATCDPVNGTCSC 120
>SB_6909| Best HMM Match : UPAR_LY6 (HMM E-Value=0.017)
Length = 472
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = -1
Query: 159 CGTIVSDCNIPNIVNQHLIQTNWPKGALYYVCYSRCCHYVLCSHWV 22
C + +DCN L +G CY CC LC+++V
Sbjct: 388 CSVVSADCNENGTRCDRLTSVLKDRGLTLKNCYVNCCQGDLCNNFV 433
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,451,607
Number of Sequences: 59808
Number of extensions: 201872
Number of successful extensions: 520
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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