Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00701
         (411 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.33 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   7.2  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              20   9.5  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              20   9.5  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.0 bits (52), Expect = 0.33
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = -2

Query: 185 CSTSSIFNIVA 153
           CSTSSIFN+VA
Sbjct: 269 CSTSSIFNLVA 279


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 181 EHPAAKVLVELAQLQDEEVGDGT 249
           EHP  K+L EL    D  + D +
Sbjct: 102 EHPNGKILRELQTDYDRRLHDNS 124


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 97  GLDKMLVDDIGDV 135
           G+D+  VDDI +V
Sbjct: 38  GIDQQTVDDINEV 50


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 97  GLDKMLVDDIGDV 135
           G+D+  VDDI +V
Sbjct: 38  GIDQQTVDDINEV 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,020
Number of Sequences: 438
Number of extensions: 1635
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)