Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00701
(411 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 138 1e-33
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 92 1e-19
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 85 1e-17
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 83 9e-17
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 82 1e-16
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 80 7e-16
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 73 1e-13
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 63 6e-11
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 63 6e-11
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 42 2e-04
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 41 3e-04
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 41 3e-04
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 41 3e-04
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 41 4e-04
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 40 7e-04
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 40 7e-04
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 39 0.002
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 39 0.002
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 37 0.005
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 36 0.011
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 138 bits (334), Expect = 1e-33
Identities = 67/84 (79%), Positives = 72/84 (85%)
Frame = +1
Query: 1 AGTRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEV 180
+G R G VRTQNVM NIVK+SLGPVGLDKMLVDDIGDVT+TNDGATIL+MLEV
Sbjct: 11 SGDRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEV 70
Query: 181 EHPAAKVLVELAQLQDEEVGDGTT 252
EHPAAKVLVELA+LQD EVGDGTT
Sbjct: 71 EHPAAKVLVELAELQDREVGDGTT 94
Score = 59.7 bits (138), Expect = 8e-10
Identities = 29/47 (61%), Positives = 36/47 (76%)
Frame = +3
Query: 255 VVIIAAELLKNADELVKTKIHPTSIISGXRXAC*EAVKYIPDNLTVQ 395
VVI+AAELLK A++LV+ KIHPTSIISG R A E+ KYI + L +
Sbjct: 96 VVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESCKYIEEKLVTK 142
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 92.3 bits (219), Expect = 1e-19
Identities = 41/91 (45%), Positives = 62/91 (68%)
Frame = +1
Query: 13 SCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPA 192
S G N+ ++V+++LGP G+DK++ DD G VT++NDGATI+K+L++ HPA
Sbjct: 19 SQGKAQLVSNINACTAVGDVVRTTLGPRGMDKLIHDDKGSVTISNDGATIMKLLDIVHPA 78
Query: 193 AKVLVELAQLQDEEVGDGTTXXXXXXXNYLR 285
AK+LV++A+ QD EVGDGTT +L+
Sbjct: 79 AKILVDIAKSQDSEVGDGTTTVVLLAAEFLK 109
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 85.4 bits (202), Expect = 1e-17
Identities = 40/82 (48%), Positives = 57/82 (69%)
Frame = +1
Query: 7 TRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEH 186
TR G + N+ I++SSLGP G+DKML GD+T+TNDGATIL+ ++V++
Sbjct: 22 TRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGATILEQMDVDN 81
Query: 187 PAAKVLVELAQLQDEEVGDGTT 252
AK++VEL++ QD E+GDGTT
Sbjct: 82 QIAKLMVELSRSQDYEIGDGTT 103
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 82.6 bits (195), Expect = 9e-17
Identities = 39/81 (48%), Positives = 54/81 (66%)
Frame = +1
Query: 10 RSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHP 189
R G V N+ +I++++LGP + KML+D G + VTNDG IL+ L+V HP
Sbjct: 14 RESGSKVHHGNIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTNDGNAILRELDVAHP 73
Query: 190 AAKVLVELAQLQDEEVGDGTT 252
AAK ++EL++ QDEEVGDGTT
Sbjct: 74 AAKSMIELSRTQDEEVGDGTT 94
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 82.2 bits (194), Expect = 1e-16
Identities = 43/91 (47%), Positives = 60/91 (65%), Gaps = 2/91 (2%)
Frame = +1
Query: 19 GDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGD--VTVTNDGATILKMLEVEHPA 192
G+ R + + ++VKS+LGP G+DK+L VTVTNDGATILK L +++PA
Sbjct: 16 GERARMASFVGAMAISDLVKSTLGPKGMDKILQSTGRGHAVTVTNDGATILKSLHIDNPA 75
Query: 193 AKVLVELAQLQDEEVGDGTTXXXXXXXNYLR 285
AKVLV+++++QD+EVGDGTT LR
Sbjct: 76 AKVLVDISKVQDDEVGDGTTSVVVLAGELLR 106
Score = 41.5 bits (93), Expect = 2e-04
Identities = 18/32 (56%), Positives = 26/32 (81%)
Frame = +3
Query: 255 VVIIAAELLKNADELVKTKIHPTSIISGXRXA 350
VV++A ELL+ A++LV +KIHP +II+G R A
Sbjct: 97 VVVLAGELLREAEKLVASKIHPMTIIAGYRMA 128
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 79.8 bits (188), Expect = 7e-16
Identities = 38/77 (49%), Positives = 52/77 (67%)
Frame = +1
Query: 22 DPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPAAKV 201
+ +R N+ + V++SLGP G+DKM+ G+V +TNDGATIL +EV PAAK+
Sbjct: 27 EDIRFANINSARAVSDAVRTSLGPKGMDKMISTANGEVIITNDGATILNKMEVLQPAAKM 86
Query: 202 LVELAQLQDEEVGDGTT 252
LVEL++ QD GDGTT
Sbjct: 87 LVELSKSQDSAAGDGTT 103
Score = 33.1 bits (72), Expect = 0.075
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 255 VVIIAAELLKNADELVKTKIHPTSIISGXRXAC*EAV 365
VV+IA LLK L+ IHPT I AC +A+
Sbjct: 105 VVVIAGALLKECQSLLTNGIHPTVISDSLHKACGKAI 141
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 72.5 bits (170), Expect = 1e-13
Identities = 33/75 (44%), Positives = 50/75 (66%)
Frame = +1
Query: 22 DPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPAAKV 201
D +N+ I ++SLGP G++KM+++ + + VTND ATI+ LE++HPAAK+
Sbjct: 26 DEAVIKNIEACKELSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEIQHPAAKL 85
Query: 202 LVELAQLQDEEVGDG 246
LV A+ Q EE+GDG
Sbjct: 86 LVLAAKAQQEEIGDG 100
Score = 39.5 bits (88), Expect = 9e-04
Identities = 17/42 (40%), Positives = 29/42 (69%)
Frame = +3
Query: 249 HIVVIIAAELLKNADELVKTKIHPTSIISGXRXAC*EAVKYI 374
++ + A ELL+NA+EL++ +HP+ IISG A +AV+ +
Sbjct: 102 NLTISFAGELLQNAEELIRMGLHPSEIISGYTKAVSKAVEIL 143
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 63.3 bits (147), Expect = 6e-11
Identities = 28/62 (45%), Positives = 43/62 (69%)
Frame = +1
Query: 67 NIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPAAKVLVELAQLQDEEVGDG 246
+++KS+LGP G KMLV GD+ +T DG T+LK +++++P A ++ A QD+ GDG
Sbjct: 31 DVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDG 90
Query: 247 TT 252
TT
Sbjct: 91 TT 92
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 63.3 bits (147), Expect = 6e-11
Identities = 28/62 (45%), Positives = 43/62 (69%)
Frame = +1
Query: 67 NIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPAAKVLVELAQLQDEEVGDG 246
+++KS+LGP G KMLV GD+ +T DG T+LK +++++P A ++ A QD+ GDG
Sbjct: 31 DVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDG 90
Query: 247 TT 252
TT
Sbjct: 91 TT 92
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 41.5 bits (93), Expect = 2e-04
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Frame = +1
Query: 67 NIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHP----AAKVLVELAQLQDEE 234
++V +LGP G + +L G + NDG T+ + +E+E P AK++ + A ++
Sbjct: 76 DLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAASKTNDL 135
Query: 235 VGDGTT 252
GDGTT
Sbjct: 136 AGDGTT 141
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 41.1 bits (92), Expect = 3e-04
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Frame = +1
Query: 67 NIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHP----AAKVLVELAQLQDEE 234
++V +LGP G + +L G + NDG T+ + +E+E P AK++ + A ++
Sbjct: 76 DLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDL 135
Query: 235 VGDGTT 252
GDGTT
Sbjct: 136 AGDGTT 141
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 41.1 bits (92), Expect = 3e-04
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Frame = +1
Query: 67 NIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHP----AAKVLVELAQLQDEE 234
++V +LGP G + +L G + NDG T+ + +E+E P AK++ + A ++
Sbjct: 80 DLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDL 139
Query: 235 VGDGTT 252
GDGTT
Sbjct: 140 AGDGTT 145
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 41.1 bits (92), Expect = 3e-04
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Frame = +1
Query: 67 NIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHP----AAKVLVELAQLQDEE 234
++V +LGP G + +L G + NDG T+ + +E+E P AK++ + A ++
Sbjct: 80 DLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDL 139
Query: 235 VGDGTT 252
GDGTT
Sbjct: 140 AGDGTT 145
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 40.7 bits (91), Expect = 4e-04
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Frame = +1
Query: 82 SLGPVGLDKMLVDDIGDVTVTNDGATILKMLEV----EHPAAKVLVELAQLQDEEVGDGT 249
+LGP G + +L D+ G V NDG TI + +E+ E+ A ++ E+A ++ GDGT
Sbjct: 75 TLGPRGRNVVL-DEFGSPKVVNDGVTIARAIELPNAMENAGAALIREVASKTNDSAGDGT 133
Query: 250 T 252
T
Sbjct: 134 T 134
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 39.9 bits (89), Expect = 7e-04
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Frame = +1
Query: 73 VKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLE----VEHPAAKVLVELAQLQDEEVG 240
V +LGP G + +L + + V NDG TI K +E +E+ A ++ E+A +E G
Sbjct: 59 VSITLGPRGRNVVLAEK-DTIKVINDGVTIAKSIELPDTIENAGATLIQEVAIKMNESAG 117
Query: 241 DGTT 252
DGTT
Sbjct: 118 DGTT 121
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 39.9 bits (89), Expect = 7e-04
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Frame = +1
Query: 82 SLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPAAKVLVELAQ----LQDEEVGDGT 249
+LGP G + +L + G + NDG T+LK +E+E P V V+L + ++ GDG+
Sbjct: 69 TLGPKGRNVVLQNKYGPPRIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGS 128
Query: 250 T 252
T
Sbjct: 129 T 129
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Frame = +1
Query: 73 VKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLE----VEHPAAKVLVELAQLQDEEVG 240
VK ++GP G + ++ G VT DG T+ K +E +++ A ++ ++A ++ G
Sbjct: 57 VKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKIKNVGASLVKQVANATNDVAG 116
Query: 241 DGTT 252
DGTT
Sbjct: 117 DGTT 120
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Frame = +1
Query: 73 VKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLE----VEHPAAKVLVELAQLQDEEVG 240
VK ++GP G + ++ G VT DG T+ K +E +++ A ++ ++A ++ G
Sbjct: 58 VKVTMGPKGRNVIIEQSWGAPKVTKDGVTVAKSIEFKDRIKNVGASLVKQVANATNDVAG 117
Query: 241 DGTT 252
DGTT
Sbjct: 118 DGTT 121
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 37.1 bits (82), Expect = 0.005
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +1
Query: 73 VKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPA----AKVLVELAQLQDEEVG 240
VK ++GP G + ++ G +T DG T+ K + + A A+++ ++A ++ G
Sbjct: 57 VKVTMGPKGRNVIIESSYGGPKITKDGVTVAKSISFQAKAKNIGAELVKQVASATNKVAG 116
Query: 241 DGTT 252
DGTT
Sbjct: 117 DGTT 120
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 35.9 bits (79), Expect = 0.011
Identities = 14/27 (51%), Positives = 23/27 (85%)
Frame = +1
Query: 172 LEVEHPAAKVLVELAQLQDEEVGDGTT 252
++V++ AK++VEL++ QD E+GDGTT
Sbjct: 1 MDVDNQIAKLMVELSRSQDYEIGDGTT 27
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,999,856
Number of Sequences: 28952
Number of extensions: 134078
Number of successful extensions: 317
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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