Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00700
(733 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 175 7e-45
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 169 3e-43
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 150 2e-37
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 138 8e-34
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 100 2e-22
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 61 2e-10
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 44 2e-05
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 33 0.056
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 29 0.90
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 27 2.8
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 26 4.8
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 26 6.4
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa... 26 6.4
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe... 25 8.4
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 8.4
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 8.4
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc... 25 8.4
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 175 bits (425), Expect = 7e-45
Identities = 106/218 (48%), Positives = 130/218 (59%), Gaps = 3/218 (1%)
Frame = +3
Query: 87 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMTP-T 263
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM P
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 264 TQYSMPNVSSDVSSKMLLCKPT*STGLSRLSV*GKPKIKVAYKGEDKTFFPEEVSSMVLT 443
T + + + +S GKP ++V YKGE KTF PEE+SSMVL
Sbjct: 64 TIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSMVLM 123
Query: 444 KMKETAEAYLGKTVQNAVITVPRTSMTLKDKPQKMQVPSLA*TFSESSMNXXXXXXXXXX 623
KM+ETAEAYLG V +AV+TVP + + K +A +N
Sbjct: 124 KMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATK-DAGLIAGLNVLRIINEPTAAAIAYG 182
Query: 624 XXXXXENEMYLSL--TRRRYFDVSILTIEDGIFEVKST 731
+ E + + FDVS+LTIE+GIFEVK+T
Sbjct: 183 LDRSNQGESNVLIFDLGGGTFDVSLLTIEEGIFEVKAT 220
Score = 138 bits (334), Expect = 8e-34
Identities = 75/138 (54%), Positives = 88/138 (63%), Gaps = 1/138 (0%)
Frame = +2
Query: 254 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSMR-QT*DQGSI*G*RQNLFPRGSQF 430
+P+NTIFDAKRLIGRKF+D VQ+DMKHWPF+V+S + Q G + P
Sbjct: 60 NPHNTIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISS 119
Query: 431 HGAYENEGNCRSLSWQNCAECSXHGSAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAI 610
+ + + AYFNDSQRQATKDAG I+GLNVLRIINEPTAAAI
Sbjct: 120 MVLMKMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAI 179
Query: 611 AYGLDKKGTGERNVLIFD 664
AYGLD+ GE NVLIFD
Sbjct: 180 AYGLDRSNQGESNVLIFD 197
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 169 bits (412), Expect = 3e-43
Identities = 103/218 (47%), Positives = 131/218 (60%), Gaps = 3/218 (1%)
Frame = +3
Query: 87 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMTP-T 263
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM P
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 264 TQYSMPNVSSDVSSKMLLCKPT*STGLSRLSV*GKPKIKVAYKGEDKTFFPEEVSSMVLT 443
T + + + + + GKP I+V +KGE KTF PEE+SSMVL
Sbjct: 64 TIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSMVLL 123
Query: 444 KMKETAEAYLGKTVQNAVITVPRTSMTLKDKPQKMQVPSLA*TFSESSMNXXXXXXXXXX 623
KM+E+AEA+LG V +AV+TVP + + K +A +N
Sbjct: 124 KMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATK-DAGLIAGLNVLRIINEPTAAAIAYG 182
Query: 624 XXXXXENEMYLSL--TRRRYFDVSILTIEDGIFEVKST 731
++E + + FDVS+LTIE+GIFEVK+T
Sbjct: 183 LDRSNQHETNVLIFDLGGGTFDVSLLTIEEGIFEVKAT 220
Score = 133 bits (321), Expect = 3e-32
Identities = 72/138 (52%), Positives = 86/138 (62%), Gaps = 1/138 (0%)
Frame = +2
Query: 254 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSMR-QT*DQGSI*G*RQNLFPRGSQF 430
+P+NTIFDAKRLIGR+F D VQ+DMKHWPF+V+ + Q G + P
Sbjct: 60 NPHNTIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISS 119
Query: 431 HGAYENEGNCRSLSWQNCAECSXHGSAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAI 610
+ + + + AYFNDSQRQATKDAG I+GLNVLRIINEPTAAAI
Sbjct: 120 MVLLKMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAI 179
Query: 611 AYGLDKKGTGERNVLIFD 664
AYGLD+ E NVLIFD
Sbjct: 180 AYGLDRSNQHETNVLIFD 197
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 150 bits (363), Expect = 2e-37
Identities = 86/215 (40%), Positives = 121/215 (56%), Gaps = 1/215 (0%)
Frame = +3
Query: 90 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMTP-TT 266
+GIDLGTTYSCV V ++G+VEIIANDQGNR TPSYVAFT+ ERL+G+AAKNQ P T
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENT 97
Query: 267 QYSMPNVSSDVSSKMLLCKPT*STGLSRLSV*GKPKIKVAYKGEDKTFFPEEVSSMVLTK 446
+ + + + + K S ++ +P ++V G+ K F PEE+S+M+L+K
Sbjct: 98 IFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAMILSK 157
Query: 447 MKETAEAYLGKTVQNAVITVPRTSMTLKDKPQKMQVPSLA*TFSESSMNXXXXXXXXXXX 626
MK+TAEAYLGK V +AV+TVP + + K
Sbjct: 158 MKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVIRIVNEPTAAAIAYGLD 217
Query: 627 XXXXENEMYLSLTRRRYFDVSILTIEDGIFEVKST 731
E + + FDVS+L+I++G+FEV +T
Sbjct: 218 KTDTEKHIVVYDLGGGTFDVSLLSIDNGVFEVLAT 252
Score = 116 bits (278), Expect = 5e-27
Identities = 61/138 (44%), Positives = 90/138 (65%), Gaps = 1/138 (0%)
Frame = +2
Query: 254 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSMR-QT*DQGSI*G*RQNLFPRGSQF 430
+P NTIFD KRLIGRKF++ T+ D+K +PF +V+ + + + ++ G ++ P
Sbjct: 93 NPENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISA 152
Query: 431 HGAYENEGNCRSLSWQNCAECSXHGSAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAI 610
+ + + + AYFND+QRQATKDAGTI+GLNV+RI+NEPTAAAI
Sbjct: 153 MILSKMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVIRIVNEPTAAAI 212
Query: 611 AYGLDKKGTGERNVLIFD 664
AYGLDK T E++++++D
Sbjct: 213 AYGLDKTDT-EKHIVVYD 229
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 138 bits (334), Expect = 8e-34
Identities = 91/218 (41%), Positives = 115/218 (52%), Gaps = 3/218 (1%)
Frame = +3
Query: 87 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMTP-T 263
A+GIDLGTTYSCV V++ VEII NDQG RTTPS+VAFT+TERL+GDAAKNQ AM P
Sbjct: 8 AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRN 67
Query: 264 TQYSMPNVSSDVSSKMLLCKPT*STGLSRLSV*GKPKIKVAYKGEDKTFFPEEVSSMVLT 443
T + + K + G P I+V Y GE K F +E+S+MVLT
Sbjct: 68 TVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAMVLT 127
Query: 444 KMKETAEAYLGKTVQNAVITVPRTSMTLKDKPQKMQ--VPSLA*TFSESSMNXXXXXXXX 617
KMKE +EA L K V+ AVITVP + K + L +
Sbjct: 128 KMKEISEAKLNKRVEKAVITVPAYFSDSQRAATKDAGAIAGLNVLRIINEPTAAAIAYGL 187
Query: 618 XXXXXXXENEMYLSLTRRRYFDVSILTIEDGIFEVKST 731
+N + L FDVS+L I+ G+FEV +T
Sbjct: 188 DAKSDKPKNVLIFDLGGGT-FDVSLLKIQGGVFEVLAT 224
Score = 120 bits (289), Expect = 2e-28
Identities = 69/139 (49%), Positives = 86/139 (61%), Gaps = 2/139 (1%)
Frame = +2
Query: 254 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSMR--QT*DQGSI*G*RQNLFPRGSQ 427
+P NT+FDAKRLIGR++ED Q D+KHWPF+V+ T + + +Q S
Sbjct: 64 NPRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISA 123
Query: 428 FHGAYENEGNCRSLSWQNCAECSXHGSAYFNDSQRQATKDAGTISGLNVLRIINEPTAAA 607
E + L+ + + AYF+DSQR ATKDAG I+GLNVLRIINEPTAAA
Sbjct: 124 MVLTKMKEISEAKLN-KRVEKAVITVPAYFSDSQRAATKDAGAIAGLNVLRIINEPTAAA 182
Query: 608 IAYGLDKKGTGERNVLIFD 664
IAYGLD K +NVLIFD
Sbjct: 183 IAYGLDAKSDKPKNVLIFD 201
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 100 bits (239), Expect = 2e-22
Identities = 73/226 (32%), Positives = 112/226 (49%), Gaps = 8/226 (3%)
Frame = +3
Query: 78 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 254
K P +GIDLGTT SC+ + + ++IAN +G RTTPS VAFT D ERL+G +AK Q +
Sbjct: 49 KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108
Query: 255 TPTTQYSMPNVSSDVSSKMLLCKPT*STGLSRLSV*GKPKIKVAYKGED-------KTFF 413
P + ++K L+ + + R + P V + D KT+
Sbjct: 109 NPENTF--------FATKRLIGRRFKEPEVQR-DIKEVPYKIVEHSNGDAWLEARGKTYS 159
Query: 414 PEEVSSMVLTKMKETAEAYLGKTVQNAVITVPRTSMTLKDKPQKMQVPSLA*TFSESSMN 593
P ++ +L+KM+ETA YLGK V+NAV+TVP + + K ++A +N
Sbjct: 160 PSQIGGFILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATK-AAGAIAGLNVLRVVN 218
Query: 594 XXXXXXXXXXXXXXXENEMYLSLTRRRYFDVSILTIEDGIFEVKST 731
+ + + FD+SIL + +G+FEV+ST
Sbjct: 219 EPTAAALAYGLDKKNDAIVAVFDLGGGTFDISILELNNGVFEVRST 264
Score = 95.9 bits (228), Expect = 5e-21
Identities = 59/139 (42%), Positives = 82/139 (58%), Gaps = 2/139 (1%)
Frame = +2
Query: 254 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSMRQT*DQGSI*G*RQNLFPRGSQFH 433
+P NT F KRLIGR+F++ VQ D+K P+++V + + P SQ
Sbjct: 109 NPENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSN--GDAWLEARGKTYSP--SQIG 164
Query: 434 GAYENEGNCRSLSW--QNCAECSXHGSAYFNDSQRQATKDAGTISGLNVLRIINEPTAAA 607
G ++ + ++ ++ AYFNDSQRQATK AG I+GLNVLR++NEPTAAA
Sbjct: 165 GFILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLRVVNEPTAAA 224
Query: 608 IAYGLDKKGTGERNVLIFD 664
+AYGLDKK + V +FD
Sbjct: 225 LAYGLDKK--NDAIVAVFD 241
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 60.9 bits (141), Expect = 2e-10
Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 3/148 (2%)
Frame = +3
Query: 75 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM 254
++ VGID G + + + V ++ +++I N+ NR+TPS V++ + R +G+AAK+ A
Sbjct: 3 SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEAS 62
Query: 255 T-PTTQYSMPNVSSDVSSKMLLCKPT*STGLSR--LSV*GKPKIKVAYKGEDKTFFPEEV 425
T S+ ++ + K S +S V G KV Y E+ F ++
Sbjct: 63 NFRNTVGSLKRLAGRTYDDPEI-KDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQL 121
Query: 426 SSMVLTKMKETAEAYLGKTVQNAVITVP 509
+ TK+K AEA L +V + VI++P
Sbjct: 122 IAAYFTKIKAIAEAELIGSVSDVVISIP 149
Score = 46.0 bits (104), Expect = 6e-06
Identities = 20/40 (50%), Positives = 29/40 (72%)
Frame = +2
Query: 509 AYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDK 628
A+F D QR+A +A I+GLN LR++N+ AAA+ YG+ K
Sbjct: 150 AWFTDIQRRALLEAANIAGLNPLRLMNDNAAAALTYGITK 189
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 44.0 bits (99), Expect = 2e-05
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 7/147 (4%)
Frame = +3
Query: 90 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMTPTTQ 269
+GI G S + + GK +++AN++GNR PS +++ + G A+ Q +
Sbjct: 27 IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQ--LVRNAD 84
Query: 270 YSMPNVSSDV-SSKMLLCKPT*STGLSRLSV*GKPKIKVAYKGE------DKTFFPEEVS 428
S+ N + S L + ++V G+ K+ + + +K E S
Sbjct: 85 NSVTNFRDLLGKSHDELTLHHCHYSANPVNVEGQIGFKITVQEDEESDPKEKILTAHEAS 144
Query: 429 SMVLTKMKETAEAYLGKTVQNAVITVP 509
L ++ E+AE +LG V V++VP
Sbjct: 145 VRHLRRLTESAEDFLGTKVNGCVMSVP 171
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/66 (28%), Positives = 35/66 (53%)
Frame = +2
Query: 491 CSXHGSAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDSA 670
C YF D+QR+A + A +GL VL++I++P A +A ++ ++ V++ +
Sbjct: 166 CVMSVPVYFTDAQRKALESAANEAGLPVLQLIHDPAAVILALMYSEEVLIDKTVVVANFG 225
Query: 671 AVLRRV 688
A V
Sbjct: 226 ATRSEV 231
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 32.7 bits (71), Expect = 0.056
Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 6/146 (4%)
Frame = +3
Query: 90 VGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMTPTT 266
+ ID GT ++ + + G +EI+ R S VAF ER+ G A N P
Sbjct: 25 LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFPA- 83
Query: 267 QYSMPNVSS--DVS--SKMLLCKPT*STGLSRLSV*GKPKIKVAYK-GEDKTFFPEEVSS 431
+S+ NV D + +L+ K S +L + +++ +++ + EE+ +
Sbjct: 84 -HSIRNVKELLDTAGLESVLVQKYQSSYPAIQLVENEETTSGISFVISDEENYSLEEIIA 142
Query: 432 MVLTKMKETAEAYLGKTVQNAVITVP 509
M + AE + + + V+TVP
Sbjct: 143 MTMEHYISLAEEMAHEKITDLVLTVP 168
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 28.7 bits (61), Expect = 0.90
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 82 HPQ*ESIWVPRTLALVSSSTGRWRSSPTTRAT 177
HP S W+P LVS+ W +SP+++ T
Sbjct: 283 HPLYSSSWIPTLHDLVSTRCSVWLTSPSSQRT 314
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 27.1 bits (57), Expect = 2.8
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -2
Query: 168 GRWR*SPPSRAGRHQRKSTWYPDRFLLRVLLPFCIFNQSCYLFLKQLSKRARLLV 4
G W SP S + H ++++ +F +RVL C+ L K +K+A L V
Sbjct: 276 GTWFASPESLSHLHDNLNSYFLLKFFVRVLFGVCMI-----LIWKSFAKQALLAV 325
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 186 PSYVAFTDTERLIGDAAKNQVAMTPTTQYSMPNVSSDVSSKMLLC 320
P +A T ER++ AAK A+ T Y++ ++ D K++ C
Sbjct: 1252 PQDLAPTTIERIVDAAAKIGEALNITGPYNIQFIAKDNEIKVIEC 1296
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 25.8 bits (54), Expect = 6.4
Identities = 25/83 (30%), Positives = 35/83 (42%)
Frame = +2
Query: 434 GAYENEGNCRSLSWQNCAECSXHGSAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIA 613
GAY N C +S N A CS SA ND I G+ + +N+ AI
Sbjct: 1689 GAYSNA--CVDISLSNLALCSILNSALIND-----------IEGIGDMAALNDNYMTAIN 1735
Query: 614 YGLDKKGTGERNVLIFDSAAVLR 682
L++K N+ + S VL+
Sbjct: 1736 DDLEEKLGIHDNIGLTHSLPVLK 1758
>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 712 IPSSMVRMDTSKYRRRVKDKY 650
+P S+ + SKYR ++K+KY
Sbjct: 387 VPPSLPVLKKSKYRAKIKEKY 407
>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 8.4
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Frame = +3
Query: 207 DTERLIGDAAKNQVAMTPTTQYSMPNVSSDVSSKMLLCKPT*STGLSRLSV*G-KPKIKV 383
+TE A N +A+ S+PN S D S + L + + +RL + G K + V
Sbjct: 308 ETEYSSNTAPSNWIALEALPLVSIPNESLDESDE--LAESLSDSEAARLQLLGIKKQESV 365
Query: 384 AYKGEDKTFFPEEVSSMV-LTKMKETAE-AYLGKTVQNAVITVP--RTSMTLKD 533
A K K+ FP + LT ++ L T Q +V+ +P + ++ LKD
Sbjct: 366 AKK---KSSFPSTIKDQPNLTLLEYLIRLCALESTTQESVLQLPDEQIALYLKD 416
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -2
Query: 357 LTTSKGQCFMSACTVASSNLRPMRRLASNIVLLGSSPPGSWRHL 226
L S+ + ++S V +RP + + +IV+ GS++H+
Sbjct: 1173 LNASQAEAYLSKMQVGDLVIRPSSKGSDHIVVTWKVAEGSYQHI 1216
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 198 AFTDTERLIGDAAKNQVAMTPTTQYSMPNVSSDV 299
AF D + G AK A P+T+ + N+S V
Sbjct: 155 AFYDASQTFGSTAKVAPAPAPSTKTPLANISKPV 188
>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +1
Query: 304 RRCYCASRHEALAFRGCQYEANLRS 378
R YC + F G QY AN+++
Sbjct: 37 RMVYCVVSYRGTGFAGLQYNANVKT 61
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,253,999
Number of Sequences: 5004
Number of extensions: 69720
Number of successful extensions: 251
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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