Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00699
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...   128   6e-31
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   2.2  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    26   5.1  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    26   6.7  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   6.7  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    25   8.9  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    25   8.9  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score =  128 bits (310), Expect = 6e-31
 Identities = 61/85 (71%), Positives = 71/85 (83%)
 Frame = +1

Query: 253 LDKIRYESLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGT 432
           LDKIRY+SL+DP  LD+ K+L+I+I P+K    L+I DTGIGMTK DL+NNLG IAKSGT
Sbjct: 43  LDKIRYQSLSDPHALDAEKDLFIRITPDKENKILSIRDTGIGMTKNDLINNLGVIAKSGT 102

Query: 433 KAFMEALQAGADISMIGQFGVGFYS 507
           K FMEA  +GADISMIGQFGVGFYS
Sbjct: 103 KQFMEAAASGADISMIGQFGVGFYS 127



 Score = 91.1 bits (216), Expect = 2e-19
 Identities = 46/84 (54%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
 Frame = +3

Query: 510 YLVADRVTVHSKHNDDEQYVWESSAGGSFTVRPDSGEP-LGRGTKIVLHVKEDLAEFMXX 686
           YLVAD+V V SKHNDDEQY+WESSAGGSFTV  D+  P L RGT+I L +KED  +++  
Sbjct: 129 YLVADKVQVVSKHNDDEQYIWESSAGGSFTVTLDTDGPRLLRGTEIRLFMKEDQLQYLEE 188

Query: 687 XXXXXXXXXXSQFIGYPIKLMVEK 758
                     S+FI YPI+L+V +
Sbjct: 189 KTIKDTVKKHSEFISYPIQLVVTR 212



 Score = 69.3 bits (162), Expect = 5e-13
 Identities = 33/41 (80%), Positives = 37/41 (90%)
 Frame = +2

Query: 131 AEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDA 253
           +  ETF F+AEI+QLMSLIINT YSNKEIFLRELISN+SDA
Sbjct: 2   SNTETFKFEAEISQLMSLIINTVYSNKEIFLRELISNASDA 42


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 20/53 (37%), Positives = 30/53 (56%)
 Frame = -3

Query: 440 KALVPDFAMVPKLFTKSALVIPIPVSMIVRVPSFLLGMILMYSSLPLSSFDGS 282
           KA++P F      +  +AL+ PI ++ I    +F+   IL + S PLS FDGS
Sbjct: 486 KAVIPIFTNQVS-YINNALIRPI-IAYINSTRTFI--PILCHVSKPLSDFDGS 534


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 417 DGSQIVHQIGLGHTNTGIDDRKSALVLVGNDLDVQL 310
           DG   V  I  G     +DDR+  L+ + NDL+V L
Sbjct: 2   DGKPQVEVIVNGQVVPNLDDREYRLIKLENDLEVLL 37


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 279 HGSVKTR*WQRAVHQDHSQ-QERGHSYDHRYRYWYDQGRFGEQF 407
           H S K    +R+   D +  +ER H+  +R+R  YD G F + +
Sbjct: 193 HSSDKREHSRRSYRNDRNNWRERTHNDRYRHRDKYDSGYFKKHY 236


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +1

Query: 253  LDKIRYESLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLG 411
            L KI      DPSK     ++Y K+   + +  L   D+GI ++   L+  +G
Sbjct: 2462 LSKILILKDYDPSKAVRKPKIYSKVSTEERDFNLEQFDSGIDLSVKFLLEGIG 2514


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +3

Query: 321 QDHSQQERGHSYDHRYRYWYDQGRFGEQF 407
           +DH++++  H+     +Y YD  R  E +
Sbjct: 603 KDHTKEQAWHAMQQGIKYMYDNWRIWENY 631


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -3

Query: 332 GMILMYSSLPLSSFDGSVRDSYLILSKRPMNWKSAHE 222
           G++     +PL +F GS R  +++    P +WK+  +
Sbjct: 132 GLVYSQDGVPLQAFSGSERTDFIL----PDSWKTTED 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,206,374
Number of Sequences: 5004
Number of extensions: 70350
Number of successful extensions: 215
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)