Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00699
(760 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22016| Best HMM Match : HSP90 (HMM E-Value=0) 117 1e-26
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10) 77 2e-14
SB_50934| Best HMM Match : HSP90 (HMM E-Value=0) 76 3e-14
SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_34759| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_41595| Best HMM Match : DUF1153 (HMM E-Value=1.7) 28 9.5
SB_37714| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_24796| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_53546| Best HMM Match : DUF1153 (HMM E-Value=2) 28 9.5
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 28 9.5
SB_20194| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_15157| Best HMM Match : DUF1153 (HMM E-Value=1.7) 28 9.5
SB_5665| Best HMM Match : DUF1153 (HMM E-Value=1.7) 28 9.5
>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
Length = 581
Score = 117 bits (281), Expect = 1e-26
Identities = 52/83 (62%), Positives = 65/83 (78%)
Frame = +3
Query: 510 YLVADRVTVHSKHNDDEQYVWESSAGGSFTVRPDSGEPLGRGTKIVLHVKEDLAEFMXXX 689
YLVA++V V +KHNDDEQY+WES+AGGSFTV+ DSGEPLGRGTKIVL++KED E++
Sbjct: 78 YLVAEKVVVTTKHNDDEQYIWESAAGGSFTVKRDSGEPLGRGTKIVLYLKEDQTEYLEEK 137
Query: 690 XXXXXXXXXSQFIGYPIKLMVEK 758
SQFIGYP+ L+V+K
Sbjct: 138 RIKEIVKKHSQFIGYPLSLLVQK 160
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/18 (94%), Positives = 18/18 (100%)
Frame = +1
Query: 454 QAGADISMIGQFGVGFYS 507
+AGADISMIGQFGVGFYS
Sbjct: 59 KAGADISMIGQFGVGFYS 76
>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
Length = 739
Score = 77.0 bits (181), Expect = 2e-14
Identities = 42/88 (47%), Positives = 58/88 (65%), Gaps = 3/88 (3%)
Frame = +1
Query: 253 LDKIRYESLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGT 432
L+K+R+ LT ++ L I I ++ GT TI D G+GMT+ +L+++LG IAKSG+
Sbjct: 98 LEKVRHFFLTGKDVSETETSLEIMIETDQEAGTFTIQDNGVGMTEEELMDHLGVIAKSGS 157
Query: 433 KAFMEALQAGADIS---MIGQFGVGFYS 507
K FME L+ A S +IGQFGVGFYS
Sbjct: 158 KVFMEKLKNEARSSHENIIGQFGVGFYS 185
Score = 54.8 bits (126), Expect = 7e-08
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = +3
Query: 510 YLVADRVTVHSK--HNDDEQYVWESSAGGSFTVRPDSGEPLGRGTKIVLHVKEDLAEFMX 683
++VAD+V V++K + + Y W S GS+ +G + RGTK+VLH+KED F
Sbjct: 187 FMVADKVDVYTKSYQPNSQGYFWTSDGSGSYEYAEANG--VARGTKLVLHLKEDCKRFAM 244
Query: 684 XXXXXXXXXXXSQFIGYPIKL 746
S F+G+PI L
Sbjct: 245 KTAVEDIVQRYSNFVGFPIYL 265
>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
Length = 855
Score = 76.2 bits (179), Expect = 3e-14
Identities = 39/62 (62%), Positives = 44/62 (70%)
Frame = +1
Query: 253 LDKIRYESLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGT 432
LDKIR SLTD + DSG EL IKI +K L + DTGIGMTK +L+ NLGTIAKSGT
Sbjct: 115 LDKIRLMSLTDKTAFDSGDELSIKIKADKENNILHVTDTGIGMTKEELIKNLGTIAKSGT 174
Query: 433 KA 438
A
Sbjct: 175 IA 176
Score = 70.5 bits (165), Expect = 1e-12
Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Frame = +3
Query: 516 VADRVTVHSKHNDDEQYVWESSAGGSFTVRPD-SGEPLGRGTKIVLHVKEDLAEFMXXXX 692
+ADRV V SK+NDD+QY+WES A SF++ D G L RGT I LH+KE+ +++
Sbjct: 175 IADRVIVTSKNNDDKQYIWESDA-SSFSISEDPRGPTLKRGTTISLHLKEEARDYLEPET 233
Query: 693 XXXXXXXXSQFIGYPIKLMVEK 758
SQFI +PI L K
Sbjct: 234 IKDLVKKYSQFINFPIFLWTSK 255
Score = 58.0 bits (134), Expect = 8e-09
Identities = 28/47 (59%), Positives = 35/47 (74%)
Frame = +2
Query: 113 EMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDA 253
+M+ + E FQAE+ ++M LIIN+ Y NKEIFLRELISNSSDA
Sbjct: 68 QMKELRDKAEKHEFQAEVNRMMKLIINSLYRNKEIFLRELISNSSDA 114
>SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/57 (21%), Positives = 31/57 (54%)
Frame = +1
Query: 289 SKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQA 459
+K+ G+E+ + ++NE ++ +G ++ D++ N+G T++ +E +A
Sbjct: 265 AKISDGQEIKFSVFIDENEYRSICLNLQVGPSEPDVLKNIGVTRMPETRSNVENCRA 321
>SB_34759| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 633
Score = 28.3 bits (60), Expect = 7.2
Identities = 22/68 (32%), Positives = 30/68 (44%)
Frame = -2
Query: 570 TRIARRHCV*SEQSRGQRPSNGVEANTELSNHADVGTCLKSLHESFSTRFRDGSQIVHQI 391
T+ ARR E +RG S E EL + H SF + F DGS ++H+
Sbjct: 228 TKAARRWAK-HEATRGHERSEHAEKAAELKRKEKKEA---TKHNSFGS-FTDGSPVLHRA 282
Query: 390 GLGHTNTG 367
G+ T G
Sbjct: 283 GVQMTGHG 290
>SB_41595| Best HMM Match : DUF1153 (HMM E-Value=1.7)
Length = 289
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -1
Query: 154 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 32
ERE +L W C HF + L L HK LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154
>SB_37714| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 406
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -1
Query: 628 PRGSPLSGRTVNEPPAEDSHTYCSSSLCLE*TVTRSATK 512
PRG GR V P +D HT + C + T R TK
Sbjct: 358 PRGRWPLGRIVETYPGQDGHTRVAKVQCGDKTYIRPITK 396
>SB_24796| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 409
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -1
Query: 154 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 32
ERE +L W C HF + L L HK LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154
>SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1276
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 567 VWESSAGGSFTVRPDSGEPLGRGTKIVLHVKEDLAE 674
VW SSA G+ ++ + E L T + K+++AE
Sbjct: 528 VWSSSASGANMIQGEPAEHLAEATAAPITKKDEIAE 563
>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -1
Query: 154 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 32
ERE +L W C HF + L L HK LTHVF +A
Sbjct: 479 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 517
>SB_53546| Best HMM Match : DUF1153 (HMM E-Value=2)
Length = 306
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -1
Query: 154 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 32
ERE +L W C HF + L L HK LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 27.9 bits (59), Expect = 9.5
Identities = 25/104 (24%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Frame = +1
Query: 388 ADLVNNL-GTIAKSGTKAFMEALQAGADISMIGQFGVGFYSITWSLTA*LFTLNTMTTSN 564
+D++ L G + +A++ ++ AG + + FG +Y S+ + TL+ MT
Sbjct: 857 SDIMKTLRGHLLTPYVRAYLLSV-AGGEAKHLVSFG--YYRAFNSMLDNIRTLHGMTMKV 913
Query: 565 TCGNLLQEARSQSAQTAVSPL------VEVQRSSFTSKRTWQNS 678
GN +E + + TAV P+ ++ QR+ +++ ++NS
Sbjct: 914 AKGNRYKEIKKATGATAVYPIDLVKTRMQNQRAVLEAEKVYKNS 957
>SB_20194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 846
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -2
Query: 633 LDQGAHRCLGGL*TSLLQKIPTRIARRHCV*SEQSRGQR-PSNGVEANTEL 484
L QG+HR G L Q++ +R+ RRH +RG R + V NT L
Sbjct: 738 LRQGSHRSTGTLRGRCHQRMQSRLGRRH---QATTRGHRVVCDAVYVNTSL 785
>SB_15157| Best HMM Match : DUF1153 (HMM E-Value=1.7)
Length = 412
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -1
Query: 154 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 32
ERE +L W C HF + L L HK LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154
>SB_5665| Best HMM Match : DUF1153 (HMM E-Value=1.7)
Length = 246
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -1
Query: 154 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 32
ERE +L W C HF + L L HK LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,102,935
Number of Sequences: 59808
Number of extensions: 546899
Number of successful extensions: 1705
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1700
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -