Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00698
         (649 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    34   0.001
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    23   1.6  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    23   1.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.9  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   6.6  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 33.9 bits (74), Expect = 0.001
 Identities = 12/53 (22%), Positives = 30/53 (56%)
 Frame = +2

Query: 44  LHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVLE 202
           +H      E+ +       GHRK++++T +A   + + D+++V+++ L K ++
Sbjct: 439 IHGDRYQSEREKALLDFKTGHRKVLVATGVAARGLDIKDVQHVINYDLPKSID 491


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 225 VKFVIASASNTFIRQKSTTYLMSGTVMELSAMLVERM 115
           +KFV++  + +F        L SGT  +L A  +E M
Sbjct: 69  MKFVLSFRTGSFTFLMVVAVLSSGTTFKLVAKTLENM 105


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 225 VKFVIASASNTFIRQKSTTYLMSGTVMELSAMLVERM 115
           +KFV++  + +F        L SGT  +L A  +E M
Sbjct: 69  MKFVLSFRTGSFTFLMVVAVLSSGTTFKLVAKTLENM 105


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -2

Query: 105  CPSGARWNTRTCSSAVMVEC 46
            CP+G  WN   C      EC
Sbjct: 2265 CPNGLFWNKDHCDWPENTEC 2284


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -1

Query: 448 WPTPGYHWADPY 413
           W T G +W  PY
Sbjct: 481 WVTDGNNWCSPY 492


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,198
Number of Sequences: 336
Number of extensions: 3172
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)