Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00698
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 72 8e-14
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 59 6e-10
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 58 8e-10
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 58 8e-10
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 57 2e-09
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 57 3e-09
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 56 3e-09
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 51 2e-07
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 46 5e-06
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 27 2.3
SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor |Schizo... 25 9.4
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 25 9.4
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 71.7 bits (168), Expect = 8e-14
Identities = 33/77 (42%), Positives = 52/77 (67%)
Frame = +2
Query: 32 WVLPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVLEADA 211
+VLPL+S +T ++Q++VF +P GHR I++TN+AE+SIT+P+I+YVVD K +
Sbjct: 703 YVLPLYSLLTTEDQMKVFDSSPEGHRMCIVATNVAETSITIPNIRYVVDCGKAKERVYNE 762
Query: 212 ITNFTSLKLCWASKKTA 262
T+ ++ W SK A
Sbjct: 763 KTSVQKFEVRWISKANA 779
Score = 35.1 bits (77), Expect = 0.009
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 543 SDGDLTYMGRIMAKLPIDVRASKLIVLGYVYGCL 644
S+G LT +G M+ P+ R SK++++G +GCL
Sbjct: 864 SEGVLTKLGEQMSLFPLSPRFSKMLIIGQQHGCL 897
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 58.8 bits (136), Expect = 6e-10
Identities = 29/79 (36%), Positives = 49/79 (62%)
Frame = +2
Query: 26 KWWVLPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVLEA 205
K+ + LHST+++ +Q VF P G RKI+LSTNIAE+ +T+PD+ V+D + + +
Sbjct: 934 KFCIYMLHSTLSSAQQQSVFNIPPKGCRKIVLSTNIAETGVTIPDVTCVIDTGVHREMRY 993
Query: 206 DAITNFTSLKLCWASKKTA 262
++ + + L + SK A
Sbjct: 994 NSRRHLSRLTDTFVSKANA 1012
Score = 46.0 bits (104), Expect = 5e-06
Identities = 21/50 (42%), Positives = 30/50 (60%)
Frame = +1
Query: 358 PEIVRCPLERLALLAKMLDMGPPSDILALAMDPPDMSNIHRTVLVLKEIG 507
PEI+R L+ + L KM MG D+L A+DPP +NI R + L ++G
Sbjct: 1046 PEILRLNLQEVVLRVKMCQMGDVQDVLGKALDPPSSTNIIRALEKLHQVG 1095
Score = 37.5 bits (83), Expect = 0.002
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +3
Query: 540 SSDGDLTYMGRIMAKLPIDVRASKLIVLGYVYGCLD 647
S + LT +G+ +++LP+D K++VLG Y C+D
Sbjct: 1098 SENEKLTKLGKFLSQLPVDANLGKILVLGCFYKCVD 1133
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 58.4 bits (135), Expect = 8e-10
Identities = 28/74 (37%), Positives = 48/74 (64%)
Frame = +2
Query: 41 PLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVLEADAITN 220
PL +++ ++Q++VF A HRK++LSTNIAE+S+T+ I+YV+D L K+ + ++
Sbjct: 342 PLFASLPQEQQLQVFLPALANHRKVVLSTNIAETSVTISGIRYVIDTGLAKIKQFNSKLG 401
Query: 221 FTSLKLCWASKKTA 262
SL + S+ A
Sbjct: 402 LESLTVQPISQSAA 415
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 58.4 bits (135), Expect = 8e-10
Identities = 31/76 (40%), Positives = 47/76 (61%)
Frame = +2
Query: 26 KWWVLPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVLEA 205
K+ VLPLH+++ EQ R F+ RKII +TNIAE+SIT+ D+ V+D +K ++
Sbjct: 840 KFEVLPLHASLNTSEQRRCFKTYT--KRKIICATNIAETSITIDDVVAVIDSGRVKQIDY 897
Query: 206 DAITNFTSLKLCWASK 253
D + + K WAS+
Sbjct: 898 DVERDLVTFKETWASR 913
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +3
Query: 507 SLKKTLDNEWSSSDGDLTYMGRIMAKLPIDVRASKLIVLGYVYGCLD 647
+LKK + + DLT +G + LPID++ KL+V G ++G L+
Sbjct: 1002 ALKKLIQVGALTVSEDLTGLGEYLVSLPIDLKLGKLLVFGSIFGYLE 1048
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 57.2 bits (132), Expect = 2e-09
Identities = 28/47 (59%), Positives = 34/47 (72%)
Frame = +2
Query: 38 LPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVD 178
LPLH+ +T DEQ+RVF RK+I STNIAE+SIT+ I YVVD
Sbjct: 273 LPLHAGLTVDEQMRVFNIYDGDFRKVIFSTNIAETSITIDGIVYVVD 319
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 56.8 bits (131), Expect = 3e-09
Identities = 26/56 (46%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Frame = +2
Query: 35 VLPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVD--FCLMKV 196
+LP++S + AD Q ++F A G RK++++TNIAE+S+TV I YVVD +C +K+
Sbjct: 735 ILPIYSQMPADLQAKIFDSAEPGVRKVVVATNIAETSLTVHGISYVVDTGYCKLKM 790
Score = 30.3 bits (65), Expect = 0.25
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 549 GDLTYMGRIMAKLPIDVRASKLIVLGYVYGCLD 647
G LT +G+ M+ P+D SKLI++ Y C +
Sbjct: 897 GKLTTLGKKMSLFPMDPSLSKLIIIAEDYKCTE 929
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 56.4 bits (130), Expect = 3e-09
Identities = 23/48 (47%), Positives = 38/48 (79%)
Frame = +2
Query: 35 VLPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVD 178
+LP++S + ++ Q R+F+ AP G RK++++TNIAE+S+T+ I YVVD
Sbjct: 755 ILPVYSALPSEIQSRIFEPAPPGGRKVVIATNIAETSLTIDGIYYVVD 802
Score = 28.7 bits (61), Expect = 0.76
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 546 DGDLTYMGRIMAKLPIDVRASKLIVLGYVYGC 641
+G LT +GR MA P++ + SK+++ GC
Sbjct: 916 EGLLTPLGRKMADFPMEPQLSKVLITSVELGC 947
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 50.8 bits (116), Expect = 2e-07
Identities = 24/74 (32%), Positives = 44/74 (59%)
Frame = +2
Query: 41 PLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVLEADAITN 220
P+++ + ++ Q ++F P G RK++L+TNIAE+SIT+ + +V+D +K + T
Sbjct: 665 PIYANLPSELQAKIFDPTPPGARKVVLATNIAETSITIDGVNFVIDSGFVKQNMYNPRTG 724
Query: 221 FTSLKLCWASKKTA 262
SL S+ +A
Sbjct: 725 MESLVSVPCSRASA 738
Score = 34.3 bits (75), Expect = 0.015
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 549 GDLTYMGRIMAKLPIDVRASKLIVLGYVYGCLD 647
G+LT +GR MA+ P D SK ++ YGC++
Sbjct: 825 GELTKLGRQMAEFPTDPMLSKSLIASSKYGCVE 857
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 46.0 bits (104), Expect = 5e-06
Identities = 23/53 (43%), Positives = 37/53 (69%), Gaps = 5/53 (9%)
Frame = +2
Query: 35 VLPLHSTITADEQVRVFQRAP----LGH-RKIILSTNIAESSITVPDIKYVVD 178
V PL+ ++ ++Q R+F+ P G+ RK+++STNIAE+S+T+ I YVVD
Sbjct: 323 VYPLYGSLPPNQQQRIFEPTPEDTKSGYGRKVVISTNIAETSLTIDGIVYVVD 375
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = +2
Query: 35 VLPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDF 181
VL LH + F + I+L TN+A + +P + ++V +
Sbjct: 363 VLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQY 411
>SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 512
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 644 QTSVDIAEHYQLGCSYIDG 588
Q D+AE Y+ G SY+DG
Sbjct: 338 QALYDLAELYEHGSSYLDG 356
>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 399
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 137 ESSITVPDIKYVVDFCLMKVLEADAIT 217
ES +T+P +K + F + LEA IT
Sbjct: 265 ESKLTIPSLKSTIFFLSIPSLEATPIT 291
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,671
Number of Sequences: 5004
Number of extensions: 51337
Number of successful extensions: 124
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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