Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00698
(649 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40812| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 2e-15
SB_27922| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 3e-13
SB_38249| Best HMM Match : HA2 (HMM E-Value=1.6e-26) 70 2e-12
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16) 60 1e-09
SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14) 60 2e-09
SB_49454| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 4e-09
SB_33763| Best HMM Match : RVT_1 (HMM E-Value=3.1e-17) 55 6e-08
SB_12766| Best HMM Match : Helicase_C (HMM E-Value=5.8e-09) 50 2e-06
SB_54154| Best HMM Match : HA2 (HMM E-Value=3.5e-22) 50 2e-06
SB_37839| Best HMM Match : HA2 (HMM E-Value=4e-21) 43 2e-04
SB_6014| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 8e-04
SB_44906| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.012
SB_15717| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_47261| Best HMM Match : HA2 (HMM E-Value=5.8e-16) 31 1.1
SB_23184| Best HMM Match : Helicase_C (HMM E-Value=7.8e-23) 29 2.5
SB_23150| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0) 29 4.3
SB_1256| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_21060| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_6561| Best HMM Match : HEAT (HMM E-Value=0.028) 28 7.5
SB_15794| Best HMM Match : DUF1605 (HMM E-Value=5.9e-12) 27 9.9
SB_53084| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 27 9.9
>SB_40812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1168
Score = 79.4 bits (187), Expect = 2e-15
Identities = 34/78 (43%), Positives = 58/78 (74%)
Frame = +2
Query: 32 WVLPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVLEADA 211
+VLPL+S +++ EQ +VFQ++P G R +++TN+AE+S+T+P+IKYVVD ++K D
Sbjct: 598 YVLPLYSLLSSKEQAKVFQQSPGGARLCVVATNVAETSLTIPNIKYVVDTGMVKRRYYDK 657
Query: 212 ITNFTSLKLCWASKKTAS 265
+T +S ++ W SK +A+
Sbjct: 658 VTGVSSFRITWTSKASAN 675
>SB_27922| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1704
Score = 72.5 bits (170), Expect = 3e-13
Identities = 32/66 (48%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Frame = +1
Query: 313 LVTDKFYDS-LRDECPPEIVRCPLERLALLAKMLDMGPPSDILALAMDPPDMSNIHRTVL 489
+V+ +FY+ + D PE+ RCPLE++ L K+LD+G P IL+LA+ PPD+ +I RTVL
Sbjct: 314 MVSRRFYEECMSDYGVPELQRCPLEQVVLQVKLLDLGAPKAILSLALQPPDIEDIERTVL 373
Query: 490 VLKEIG 507
+LK++G
Sbjct: 374 LLKQVG 379
Score = 35.1 bits (77), Expect = 0.050
Identities = 12/24 (50%), Positives = 20/24 (83%)
Frame = +3
Query: 546 DGDLTYMGRIMAKLPIDVRASKLI 617
DG+LT++G+++ LP+DVR KL+
Sbjct: 394 DGELTFIGKVLGTLPVDVRIGKLM 417
>SB_38249| Best HMM Match : HA2 (HMM E-Value=1.6e-26)
Length = 355
Score = 69.7 bits (163), Expect = 2e-12
Identities = 37/78 (47%), Positives = 50/78 (64%)
Frame = +2
Query: 20 NYKWWVLPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVL 199
NY+ +LPLHS I ++Q RVF+ P G KIILSTNIAE+SIT+ D+ +V+D KV
Sbjct: 74 NYR--LLPLHSQIPREDQRRVFEPVPEGVTKIILSTNIAETSITIDDVVFVIDSVKAKVK 131
Query: 200 EADAITNFTSLKLCWASK 253
+ N T+ WAS+
Sbjct: 132 LFTSHNNMTNYATVWASQ 149
Score = 44.4 bits (100), Expect = 8e-05
Identities = 21/57 (36%), Positives = 34/57 (59%)
Frame = +1
Query: 334 DSLRDECPPEIVRCPLERLALLAKMLDMGPPSDILALAMDPPDMSNIHRTVLVLKEI 504
D L + PEI+R PL LAL K+L +G + L A++PP + + +V +LK++
Sbjct: 177 DRLAEHATPEILRTPLHELALTIKLLKLGDITAFLNNAIEPPPLDAVVESVAMLKDM 233
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/41 (39%), Positives = 28/41 (68%)
Frame = +3
Query: 525 DNEWSSSDGDLTYMGRIMAKLPIDVRASKLIVLGYVYGCLD 647
D E ++ +LT +G ++AKLPI+ R K+++LG ++ C D
Sbjct: 232 DMEALDTNENLTPLGYMLAKLPIEPRLGKMVILGCIFHCGD 272
>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
Length = 2352
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/75 (38%), Positives = 48/75 (64%)
Frame = +2
Query: 38 LPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVLEADAIT 217
LPLH + ++Q +VFQ+ P G RK++ STN AE+SIT+P +K+VVD + K ++ +
Sbjct: 940 LPLHGKLLQEDQQKVFQQFP-GKRKVVFSTNCAETSITIPGVKFVVDTGMAKEMKYEEKR 998
Query: 218 NFTSLKLCWASKKTA 262
L++ S+ +A
Sbjct: 999 GLNILEVSVISRSSA 1013
Score = 33.1 bits (72), Expect = 0.20
Identities = 25/99 (25%), Positives = 43/99 (43%)
Frame = +1
Query: 220 LHITEVMLGLEENCEQXXXXXXXXXXXXXXXLVTDKFYDSLRDECPPEIVRCPLERLALL 399
L+I EV + + +Q L T+K Y ++ PEI+R L + L
Sbjct: 1000 LNILEVSVISRSSADQRKGRAGRTDSGKCYRLYTEKDYTAMEKCAQPEILRVHLGQ--TL 1057
Query: 400 AKMLDMGPPSDILALAMDPPDMSNIHRTVLVLKEIGV*K 516
K++D+G ++ P +I+R V L ++G K
Sbjct: 1058 VKLMDLGISDPFKFDYVEAPSKESINRAVASLVQLGAIK 1096
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 546 DGDLTYMGRIMAKLPIDVRASKLIVLG 626
DG LT +GR ++K+P++ R +L+ G
Sbjct: 1097 DGSLTELGRKLSKVPLEPRLGRLLFEG 1123
>SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)
Length = 1197
Score = 60.1 bits (139), Expect = 2e-09
Identities = 27/56 (48%), Positives = 43/56 (76%), Gaps = 2/56 (3%)
Frame = +2
Query: 35 VLPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVD--FCLMKV 196
VLP++S + +D Q ++FQ+AP G RK +++TNIAE+S+TV I +V+D +C +KV
Sbjct: 782 VLPIYSQLPSDLQAKIFQKAPDGVRKCVVATNIAETSLTVDGIMFVIDAGYCKLKV 837
>SB_49454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 696
Score = 58.8 bits (136), Expect = 4e-09
Identities = 30/76 (39%), Positives = 47/76 (61%)
Frame = +2
Query: 35 VLPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVLEADAI 214
V P+ + + + +Q++VF+ A G RK+ILSTNIAE+S+T+P +KYV+D +K
Sbjct: 308 VCPMFAALPSSQQMQVFRPAIPGARKVILSTNIAETSVTIPGVKYVIDTGYVKAKGFHPK 367
Query: 215 TNFTSLKLCWASKKTA 262
T L++ SK A
Sbjct: 368 TGLDMLRVQPVSKAQA 383
>SB_33763| Best HMM Match : RVT_1 (HMM E-Value=3.1e-17)
Length = 271
Score = 54.8 bits (126), Expect = 6e-08
Identities = 20/34 (58%), Positives = 30/34 (88%)
Frame = +3
Query: 546 DGDLTYMGRIMAKLPIDVRASKLIVLGYVYGCLD 647
DG+LT++G+++ LP+DVR KL+VLGYV+GCL+
Sbjct: 231 DGELTFIGKVLGTLPVDVRIGKLMVLGYVFGCLE 264
>SB_12766| Best HMM Match : Helicase_C (HMM E-Value=5.8e-09)
Length = 185
Score = 50.0 bits (114), Expect = 2e-06
Identities = 22/45 (48%), Positives = 34/45 (75%)
Frame = +2
Query: 35 VLPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKY 169
VLP++S + +EQ+ VF+R P RK+I++TN+AE+SIT+ I Y
Sbjct: 107 VLPMYSGLPYEEQMLVFKRPPPNTRKVIVATNVAEASITIDGIVY 151
>SB_54154| Best HMM Match : HA2 (HMM E-Value=3.5e-22)
Length = 354
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = +2
Query: 74 VRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVD 178
+ VF R PLG RKI+++TNIAE+SIT+ D+ +VVD
Sbjct: 199 MEVFDRPPLGVRKIVIATNIAETSITIDDVVFVVD 233
Score = 34.3 bits (75), Expect = 0.087
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 552 DLTYMGRIMAKLPIDVRASKLIVLGYVYGCLD 647
+LT +G +A LP+D R K+I+ G + CLD
Sbjct: 275 NLTPLGYHLASLPVDPRIGKMILFGAIVSCLD 306
>SB_37839| Best HMM Match : HA2 (HMM E-Value=4e-21)
Length = 422
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/53 (37%), Positives = 35/53 (66%), Gaps = 6/53 (11%)
Frame = +2
Query: 38 LPLHSTITADEQVRVFQRAPLGH------RKIILSTNIAESSITVPDIKYVVD 178
+PL+ST+ +Q R+F+ AP RK +++TNIAE+S+T+ + +V+D
Sbjct: 126 IPLYSTLPPTQQQRIFEAAPPDRPNGAIGRKCVVATNIAETSLTIDGVVFVID 178
Score = 33.1 bits (72), Expect = 0.20
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +3
Query: 546 DGDLTYMGRIMAKLPIDVRASKLIVLGYVYGC 641
+GDLT +G +MA+ P+D + +K+++ + C
Sbjct: 292 NGDLTELGSMMAEFPLDPQLAKMVIASCEFNC 323
>SB_6014| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 36
Score = 41.1 bits (92), Expect = 8e-04
Identities = 19/33 (57%), Positives = 25/33 (75%)
Frame = +2
Query: 80 VFQRAPLGHRKIILSTNIAESSITVPDIKYVVD 178
VF AP G RK I+STNIAE+SIT+ I+++ D
Sbjct: 1 VFDVAPDGVRKCIVSTNIAETSITIDGIRFIAD 33
>SB_44906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 37.1 bits (82), Expect = 0.012
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Frame = +2
Query: 35 VLPLHSTITADEQVRVFQ--RAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVLEAD 208
VL +H T D V VF + + ++IL+TNIAE+S+T+ I YV+D K +
Sbjct: 286 VLQIHIT-QPDGDVLVFLTGQEEIETAQVILATNIAETSLTIDGIIYVIDPGFCKQKSYN 344
Query: 209 AITNFTSLKLCWASKKTAS 265
T SL + SK +A+
Sbjct: 345 PRTGMESLVVTPISKASAN 363
>SB_15717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 273
Score = 33.1 bits (72), Expect = 0.20
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +3
Query: 546 DGDLTYMGRIMAKLPIDVRASKLIVLGYVYGC 641
+GDLT +G +MA+ P+D + +K+++ + C
Sbjct: 21 NGDLTELGSMMAEFPLDPQLAKMVIASCEFNC 52
>SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1303
Score = 31.9 bits (69), Expect = 0.46
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 543 SDGDLTYMGRIMAKLPIDVRASKLIVLGYVYGCLD 647
++G LT +GR MA+ P++ + SK+++ GC D
Sbjct: 720 NEGLLTRLGRRMAEFPLEPQLSKMLIQSVHLGCSD 754
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 35 VLPLHSTITADEQVRVFQRAPLGHRK 112
+LP++S + ++ Q R+F AP G RK
Sbjct: 544 ILPVYSALPSEMQTRIFDPAPPGSRK 569
>SB_47261| Best HMM Match : HA2 (HMM E-Value=5.8e-16)
Length = 351
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/36 (30%), Positives = 25/36 (69%)
Frame = +3
Query: 540 SSDGDLTYMGRIMAKLPIDVRASKLIVLGYVYGCLD 647
+ D +T +G+++++LP+DV K++++G V+ D
Sbjct: 125 TEDEAITPVGQMLSRLPVDVVIGKMLLMGSVFHVTD 160
>SB_23184| Best HMM Match : Helicase_C (HMM E-Value=7.8e-23)
Length = 226
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 44 LHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVV 175
LHS + + E+ V R G ++++ST + E + VP+ +V
Sbjct: 98 LHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMV 141
>SB_23150| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1133
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -2
Query: 303 ASVTHAACATGSL-LAVFFEAQHNFSDVKFVIASASNTFIRQKSTTYLMSGTV 148
+++ H SL + V F NFS + ASASN +R+ + T + SG +
Sbjct: 202 SALEHCIAMRESLRVRVAFPRSSNFSAIWVNAASASNVVLREHANTVIYSGNL 254
>SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
Length = 1145
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 337 SLRDECPPEIVRCPLERLALLAKMLDMGPPSDILALAMDPPDMSNIHRTVLVLKEI 504
S +EC E++ +L + + + +G PS+ L D P + I T L ++ I
Sbjct: 330 SSEEECCDEVIADETRKLLISSSVPSLGIPSNASVLDEDSPQQTGIATTKLRVQNI 385
>SB_1256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 52
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +2
Query: 26 KWWVLPLHSTITADEQ 73
+W VLPLHS+++ DEQ
Sbjct: 35 RWIVLPLHSSLSVDEQ 50
>SB_21060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 845
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 56 ITADEQVRVFQRAPLGHR-KIILSTNIAESSITVPDIKYVVDFCLM 190
+T EQ V + G II++T +AE + + D YV+ + +M
Sbjct: 599 MTQREQEEVIAKFRAGSECNIIIATTVAEEGLDIDDCSYVIRYDMM 644
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 28.3 bits (60), Expect = 5.7
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = +2
Query: 101 GHRKIILSTNIAESSITVPDIKYVVDFCL 187
G ++++TN+A + + D+K+V++F L
Sbjct: 1011 GRCPVLIATNVAARGLDIDDVKHVINFDL 1039
>SB_6561| Best HMM Match : HEAT (HMM E-Value=0.028)
Length = 1444
Score = 27.9 bits (59), Expect = 7.5
Identities = 20/67 (29%), Positives = 34/67 (50%)
Frame = +2
Query: 71 QVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVLEADAITNFTSLKLCWAS 250
Q+ ++ LGHR ++L A +PD+ V L+K L +D +T ++ W
Sbjct: 30 QLEYCRKLSLGHRVVLLRAASAIIKDVLPDLDLEVSKQLIK-LASDELTKSKEIEPEW-- 86
Query: 251 KKTASSE 271
+TA+SE
Sbjct: 87 -QTAASE 92
>SB_15794| Best HMM Match : DUF1605 (HMM E-Value=5.9e-12)
Length = 655
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 537 SSSDGDLTYMGRIMAKLPIDVRASKLIVLGYVYGCLD 647
S G+ R +A LP++ R K+I+ V CLD
Sbjct: 74 SKEYGNTKRYSRHLADLPVEPRLGKMILYSVVLKCLD 110
>SB_53084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 936
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/42 (21%), Positives = 23/42 (54%)
Frame = -2
Query: 189 IRQKSTTYLMSGTVMELSAMLVERMILRCPSGARWNTRTCSS 64
+R+ + + S + +++ +++ + + CP WN+ CSS
Sbjct: 270 LRRTTASLQHSPQMDQMTGAIIQAVTICCPGALVWNSTVCSS 311
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/53 (22%), Positives = 29/53 (54%)
Frame = +2
Query: 44 LHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVLE 202
LHS D + ++ + G I+++T++A + P++ +V+++ L +E
Sbjct: 362 LHSEKPQDYRFKLVKAFRDGKVDILVATDVASRGLDFPEVTHVINYDLPDTIE 414
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,636,895
Number of Sequences: 59808
Number of extensions: 428817
Number of successful extensions: 946
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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