Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00698
(649 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to ... 77 1e-14
At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative sim... 76 2e-14
At5g10370.1 68418.m01203 helicase domain-containing protein / IB... 73 2e-13
At1g58050.1 68414.m06579 helicase domain-containing protein cont... 72 4e-13
At4g01020.1 68417.m00137 helicase domain-containing protein / IB... 71 7e-13
At2g35920.1 68415.m04409 helicase domain-containing protein simi... 70 2e-12
At1g58060.1 68414.m06580 helicase domain-containing protein cont... 69 4e-12
At1g33390.1 68414.m04133 helicase domain-containing protein simi... 66 1e-11
At1g26370.1 68414.m03217 RNA helicase, putative similar to SP|Q1... 65 4e-11
At1g48650.1 68414.m05445 helicase domain-containing protein cont... 64 6e-11
At4g16680.1 68417.m02519 RNA helicase, putative similar to SP|Q1... 60 9e-10
At1g32490.1 68414.m04009 RNA helicase, putative similar to ATP-d... 60 2e-09
At2g35340.1 68415.m04333 RNA helicase, putative similar to ATP-d... 59 2e-09
At2g01130.1 68415.m00021 helicase domain-containing protein simi... 58 4e-09
At4g18465.1 68417.m02740 RNA helicase, putative similar to SP|Q1... 58 5e-09
At5g04895.1 68418.m00514 helicase domain-containing protein simi... 56 2e-08
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 55 4e-08
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 54 6e-08
At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative si... 54 8e-08
At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family... 52 4e-07
At2g47250.1 68415.m05900 RNA helicase, putative similar to SP|P5... 46 3e-05
At3g62310.1 68416.m07000 RNA helicase, putative similar to SP|P5... 43 2e-04
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 32 0.29
At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative 31 0.66
At1g75010.1 68414.m08709 MORN (Membrane Occupation and Recogniti... 29 2.0
At5g45510.1 68418.m05590 leucine-rich repeat family protein cont... 29 2.7
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 29 2.7
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 29 2.7
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 29 2.7
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 29 2.7
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica... 29 3.5
At3g59160.1 68416.m06596 F-box family protein contains F-box dom... 28 6.1
At5g14900.1 68418.m01748 helicase associated (HA2) domain-contai... 27 8.1
>At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to
DEIH-box RNA/DNA helicase GB:BAA84364 GI:5881579
[Arabidopsis thaliana]
Length = 1576
Score = 76.6 bits (180), Expect = 1e-14
Identities = 37/89 (41%), Positives = 53/89 (59%)
Frame = +2
Query: 26 KWWVLPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVLEA 205
K+ +L LHS + A+EQ +VF R P G RKI+L+TNIAES++T+ D+ YV+D MK
Sbjct: 606 KFIILCLHSRVPAEEQKKVFNRPPRGCRKIVLATNIAESAVTIDDVVYVIDSGRMKEKSY 665
Query: 206 DAITNFTSLKLCWASKKTASSEPVAQAAC 292
D + ++L+ W SK A C
Sbjct: 666 DPYNDVSTLQSSWVSKANAKQRAGRAGRC 694
Score = 44.4 bits (100), Expect = 7e-05
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +1
Query: 337 SLRDECPPEIVRCPLERLALLAKMLDMG-PPSDILALAMDPPDMSNIHRTVLVLKEIG 507
SL + PE++R P++ L L KMLD +D L MDPP +I +++LK+IG
Sbjct: 710 SLPEYRVPEVMRMPVDELCLQVKMLDPNCNVNDFLQKLMDPPVAQSIENALIILKDIG 767
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 552 DLTYMGRIMAKLPIDVRASKLIVLGYVYGCLD 647
+LT +G+ +LP+ R SK+I + CLD
Sbjct: 774 ELTELGQKFGQLPVHPRISKMIYFAILVNCLD 805
>At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative
similar to DEIH-box RNA/DNA helicase [Arabidopsis
thaliana] GI:5881579; contains Pfam profiles PF04408:
Helicase associated domain (HA2), PF00271: Helicase
conserved C-terminal domain
Length = 1299
Score = 75.8 bits (178), Expect = 2e-14
Identities = 37/89 (41%), Positives = 52/89 (58%)
Frame = +2
Query: 26 KWWVLPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVLEA 205
K+ ++ LHS + A EQ +VF R P G RKI+L+TNIAES++T+ D+ YV+D MK
Sbjct: 582 KFDIICLHSMVPAGEQKKVFNRPPPGCRKIVLATNIAESAVTIDDVVYVIDSGRMKEKSY 641
Query: 206 DAITNFTSLKLCWASKKTASSEPVAQAAC 292
D N ++L+ W SK A C
Sbjct: 642 DPYNNVSTLQSSWVSKANAKQRQGRAGRC 670
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 337 SLRDECPPEIVRCPLERLALLAKMLDMG-PPSDILALAMDPPDMSNIHRTVLVLKEIG 507
S+ D PEI R P+E L L K+LD +D L +DPP +I + +L++IG
Sbjct: 686 SMPDFKVPEIKRMPVEELCLQVKILDPNCKTNDFLQKLLDPPVDQSIANALSILQDIG 743
>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to RNA-dependent ATPase/helicase Cdc28p
[Schizosaccharomyces pombe] GI:1439562; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, weak hit
to PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1775
Score = 72.9 bits (171), Expect = 2e-13
Identities = 34/75 (45%), Positives = 52/75 (69%)
Frame = +2
Query: 38 LPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVLEADAIT 217
LPLH ++ +EQ RVFQ P G RK+I +TNIAE+S+T+P +KYV+D ++K + + T
Sbjct: 552 LPLHGKLSFEEQFRVFQNHP-GRRKVIFATNIAETSLTIPGVKYVIDSGMVKESKYEPRT 610
Query: 218 NFTSLKLCWASKKTA 262
+ LK+C S+ +A
Sbjct: 611 GMSILKVCRVSQSSA 625
>At1g58050.1 68414.m06579 helicase domain-containing protein contains
similarity to SP|P24785 Dosage compensation regulator
(Male-less protein) (No action potential protein)
{Drosophila melanogaster}; contains Pfam profiles
PF04408: Helicase associated domain (HA2), PF00271:
Helicase conserved C-terminal domain
Length = 1417
Score = 71.7 bits (168), Expect = 4e-13
Identities = 35/77 (45%), Positives = 49/77 (63%)
Frame = +2
Query: 32 WVLPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVLEADA 211
W+LPLHS+I + EQ +VF R P G RK+I++TNIAE+SIT+ D+ YV+D K +
Sbjct: 915 WLLPLHSSIASTEQKKVFLRPPKGIRKVIIATNIAETSITIEDVVYVIDSGKHKENRYNP 974
Query: 212 ITNFTSLKLCWASKKTA 262
+S+ W SK A
Sbjct: 975 HKKLSSMVEDWVSKANA 991
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/61 (34%), Positives = 35/61 (57%)
Frame = +1
Query: 325 KFYDSLRDECPPEIVRCPLERLALLAKMLDMGPPSDILALAMDPPDMSNIHRTVLVLKEI 504
+F +R PE++R PL L L K+L +G L+ A++PP S I+ +L+L ++
Sbjct: 1014 RFEKLMRPYQVPEMLRVPLVELCLHIKLLGLGQIKPFLSKALEPPSESAINSAILLLHKV 1073
Query: 505 G 507
G
Sbjct: 1074 G 1074
Score = 37.5 bits (83), Expect = 0.008
Identities = 14/33 (42%), Positives = 24/33 (72%)
Frame = +3
Query: 546 DGDLTYMGRIMAKLPIDVRASKLIVLGYVYGCL 644
D +LT +G +AKLP+D+ K+++ G ++GCL
Sbjct: 1079 DEELTPLGHHLAKLPVDLLIGKMLLYGGIFGCL 1111
>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1787
Score = 70.9 bits (166), Expect = 7e-13
Identities = 33/75 (44%), Positives = 51/75 (68%)
Frame = +2
Query: 38 LPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVLEADAIT 217
LPLH ++ +EQ VFQ P G RK+I +TNIAE+S+T+P +KYV+D ++K + + T
Sbjct: 549 LPLHGKLSFEEQFMVFQNYP-GRRKVIFATNIAETSLTIPGVKYVIDSGMVKESKYEPRT 607
Query: 218 NFTSLKLCWASKKTA 262
+ LK+C S+ +A
Sbjct: 608 GMSILKVCQVSQSSA 622
>At2g35920.1 68415.m04409 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 995
Score = 69.7 bits (163), Expect = 2e-12
Identities = 36/79 (45%), Positives = 46/79 (58%)
Frame = +2
Query: 26 KWWVLPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVLEA 205
K+ VLPLH ++ Q +F R P RKI+L+TNIAESSIT+ D+ YVVD K
Sbjct: 534 KFLVLPLHGSMPTVNQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSY 593
Query: 206 DAITNFTSLKLCWASKKTA 262
DA+ L W SK +A
Sbjct: 594 DALNKVACLLPSWISKASA 612
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/59 (38%), Positives = 31/59 (52%)
Frame = +1
Query: 331 YDSLRDECPPEIVRCPLERLALLAKMLDMGPPSDILALAMDPPDMSNIHRTVLVLKEIG 507
YD+ PEI+R PL+ L L K L +G LA A+ PPD + + +LK IG
Sbjct: 636 YDAFPQYQLPEIIRTPLQELCLHIKSLQVGSIGSFLAKALQPPDALAVENAIELLKTIG 694
Score = 31.1 bits (67), Expect = 0.66
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = +3
Query: 552 DLTYMGRIMAKLPIDVRASKLIVLGYVYGCLD 647
+LT +GR + LP+D K++++G ++ C++
Sbjct: 701 ELTPLGRHLCTLPVDPNIGKMLLIGAIFQCVN 732
>At1g58060.1 68414.m06580 helicase domain-containing protein contains
similarity to SP|P24785 Dosage compensation regulator
(Male-less protein) (No action potential protein)
{Drosophila melanogaster}; contains Pfam profiles
PF04408: Helicase associated domain (HA2), PF00271:
Helicase conserved C-terminal domain
Length = 1459
Score = 68.5 bits (160), Expect = 4e-12
Identities = 34/77 (44%), Positives = 48/77 (62%)
Frame = +2
Query: 32 WVLPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVLEADA 211
W+LPLHS+I + EQ +VF R P G RK+I +TNIAE+SIT+ D+ YV+D K +
Sbjct: 948 WLLPLHSSIASSEQRKVFLRPPKGLRKVIAATNIAETSITIDDVVYVIDSGKHKENRYNP 1007
Query: 212 ITNFTSLKLCWASKKTA 262
+S+ W S+ A
Sbjct: 1008 QKKLSSMVEDWISQANA 1024
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +3
Query: 546 DGDLTYMGRIMAKLPIDVRASKLIVLGYVYGCL 644
D +LT +G +AKLP+DV K+++ G ++GCL
Sbjct: 1112 DEELTPLGHHLAKLPVDVLIGKMLLYGGIFGCL 1144
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +1
Query: 325 KFYDSLRDECPPEIVRCPLERLALLAKMLDMGPPSDILALAMDPPDMSNIHRTVLVLKEI 504
+F +R PE++R PL L L K+L +G L+ A++PP + + +L E+
Sbjct: 1047 RFEKLMRPYQVPEMLRMPLVELCLQIKLLGLGHIKPFLSRALEPPSEGAMTSAISLLHEV 1106
Query: 505 G 507
G
Sbjct: 1107 G 1107
>At1g33390.1 68414.m04133 helicase domain-containing protein similar
to kurz protein [Drosophila melanogaster] GI:5869803;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1237
Score = 66.5 bits (155), Expect = 1e-11
Identities = 31/77 (40%), Positives = 51/77 (66%)
Frame = +2
Query: 35 VLPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVLEADAI 214
VLPL++ ++ Q+RVF+ R ++++TN+AE+S+T+P IKYVVD +KV D+
Sbjct: 649 VLPLYAMLSPAAQLRVFEEVEKEERLVVVATNVAETSLTIPGIKYVVDTGRVKVKNYDSK 708
Query: 215 TNFTSLKLCWASKKTAS 265
T S ++ W S+ +AS
Sbjct: 709 TGMESYEVDWISQASAS 725
>At1g26370.1 68414.m03217 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 717
Score = 64.9 bits (151), Expect = 4e-11
Identities = 32/72 (44%), Positives = 47/72 (65%)
Frame = +2
Query: 38 LPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVLEADAIT 217
L + S + +++Q++VF AP G RK+IL+TNIAE+SIT+P I+YV+D +K D
Sbjct: 328 LAIFSALPSEQQMKVFAPAPTGFRKVILATNIAETSITIPGIRYVIDPGFVKARSYDPSK 387
Query: 218 NFTSLKLCWASK 253
SL + ASK
Sbjct: 388 GMESLDVVPASK 399
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +1
Query: 313 LVTDKFYDSLRDECPPEIVRCPLERLALLAKMLDMGPPSDILAL-AMDPPDMSNIHRTVL 489
L ++ ++ L D PEI RC L + L K L + DI+ +D P I + +
Sbjct: 420 LYPEREFEKLEDSTKPEIKRCNLSNIILQLKALGI---DDIVGFDFIDKPSRGAIIKALA 476
Query: 490 VLKEIG 507
L +G
Sbjct: 477 ELHSLG 482
>At1g48650.1 68414.m05445 helicase domain-containing protein
contains similarity to DEIH-box RNA/DNA helicase
[Arabidopsis thaliana] GI:5881579; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, PF00035:
Double-stranded RNA binding motif
Length = 1197
Score = 64.5 bits (150), Expect = 6e-11
Identities = 32/76 (42%), Positives = 45/76 (59%)
Frame = +2
Query: 35 VLPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVLEADAI 214
+L H ++ + EQ +F R P G RKI+L+TN+AE+SIT+ D+ YV+D K DA+
Sbjct: 612 LLACHGSMASSEQRLIFDRPPEGIRKIVLATNMAETSITINDVVYVIDCGKAKETSYDAL 671
Query: 215 TNFTSLKLCWASKKTA 262
N L W SK A
Sbjct: 672 NNTPCLLPSWISKAAA 687
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +1
Query: 331 YDSLRDECPPEIVRCPLERLALLAKMLDMGPPSDILALAMDPPDMSNIHRTVLVLKEIG 507
Y++ D PE++R PL+ L L K L +G S+ L+ A+ PP+ ++ V LK IG
Sbjct: 711 YEAFADYQQPELLRTPLQSLCLQIKSLGLGSISEFLSRALQPPEALSVQNAVEYLKIIG 769
Score = 36.3 bits (80), Expect = 0.018
Identities = 12/34 (35%), Positives = 25/34 (73%)
Frame = +3
Query: 546 DGDLTYMGRIMAKLPIDVRASKLIVLGYVYGCLD 647
D +LT +G+ ++ LP++ + K+++LG ++ CLD
Sbjct: 774 DENLTPLGKNLSMLPVEPKLGKMLILGAIFNCLD 807
>At4g16680.1 68417.m02519 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 883
Score = 60.5 bits (140), Expect = 9e-10
Identities = 29/77 (37%), Positives = 48/77 (62%)
Frame = +2
Query: 35 VLPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVLEADAI 214
+ P++S + Q +VF+ AP G RK++L+TNIAE+S+T+ +KYV+D K+ +
Sbjct: 466 ICPIYSNLPTPLQAKVFEPAPKGTRKVVLATNIAETSLTIDGVKYVIDPGYCKINSYNPR 525
Query: 215 TNFTSLKLCWASKKTAS 265
T SL + SK +A+
Sbjct: 526 TGMESLLVTPISKASAA 542
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 549 GDLTYMGRIMAKLPIDVRASKLIVLGYVYGC 641
G++T +G M + P+D SK+IV Y C
Sbjct: 624 GEITKVGERMVEFPVDPMLSKMIVGSEKYKC 654
>At1g32490.1 68414.m04009 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1044
Score = 59.7 bits (138), Expect = 2e-09
Identities = 28/77 (36%), Positives = 49/77 (63%)
Frame = +2
Query: 35 VLPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVLEADAI 214
+ P+++ + ++ Q ++F+ P G RK++L+TNIAE+S+T+ IKYVVD K+ +
Sbjct: 648 ICPIYANLPSELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVDPGFSKMKSYNPR 707
Query: 215 TNFTSLKLCWASKKTAS 265
T SL + SK +A+
Sbjct: 708 TGMESLLITPISKASAT 724
Score = 34.7 bits (76), Expect = 0.054
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +3
Query: 549 GDLTYMGRIMAKLPIDVRASKLIVLGYVYGCLD 647
G+LT GR MA+ P+D SK+IV+ Y C D
Sbjct: 810 GELTKAGRRMAEFPLDPMLSKMIVVSDKYKCSD 842
>At2g35340.1 68415.m04333 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1110
Score = 59.3 bits (137), Expect = 2e-09
Identities = 28/77 (36%), Positives = 49/77 (63%)
Frame = +2
Query: 35 VLPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVLEADAI 214
+ P+++ + ++ Q ++F+ P G RK++L+TNIAE+S+T+ IKYVVD K+ +
Sbjct: 714 ICPIYANLPSELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVDPGFSKMKSYNPR 773
Query: 215 TNFTSLKLCWASKKTAS 265
T SL + SK +A+
Sbjct: 774 TGMESLLVTPISKASAT 790
Score = 34.7 bits (76), Expect = 0.054
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +3
Query: 549 GDLTYMGRIMAKLPIDVRASKLIVLGYVYGCLD 647
G+LT GR MA+ P+D SK+IV+ Y C D
Sbjct: 876 GELTKAGRRMAEFPLDPMLSKMIVVSDKYKCSD 908
>At2g01130.1 68415.m00021 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 1112
Score = 58.4 bits (135), Expect = 4e-09
Identities = 30/76 (39%), Positives = 44/76 (57%)
Frame = +2
Query: 35 VLPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVLEADAI 214
+L H ++ EQ +F+ G RKI+L+TNIAE+SIT+ D+ +V+D K DA+
Sbjct: 531 LLACHGSMETFEQRLIFEEPASGVRKIVLATNIAETSITINDVAFVIDCGKAKETSYDAL 590
Query: 215 TNFTSLKLCWASKKTA 262
N L W SK +A
Sbjct: 591 NNTPCLLPSWISKVSA 606
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Frame = +1
Query: 331 YDSLRDECPPEIVRCPLERLALLAKMLDMGPPSDILALAMDPPDMSNIHRTVLVLKEIG 507
YD+ + PEI+R PL L L K L++G S+ L+ A+ P++ + + + LK IG
Sbjct: 630 YDAFAEYQLPEILRTPLHSLCLQIKSLNLGSISEFLSRALQSPELLAVQKAIAFLKIIG 688
Score = 41.5 bits (93), Expect = 5e-04
Identities = 15/32 (46%), Positives = 25/32 (78%)
Frame = +3
Query: 552 DLTYMGRIMAKLPIDVRASKLIVLGYVYGCLD 647
DLT +GR ++KLP++ + K+++LG + GCLD
Sbjct: 695 DLTTLGRYLSKLPMEPKLGKMLILGAILGCLD 726
>At4g18465.1 68417.m02740 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 704
Score = 58.0 bits (134), Expect = 5e-09
Identities = 31/75 (41%), Positives = 46/75 (61%)
Frame = +2
Query: 38 LPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVLEADAIT 217
LPL+S ++ EQ +F P G RK+ILSTNIAE+S+T+ + YV+D K + I+
Sbjct: 321 LPLYSGLSRSEQELIFTPTPRGKRKVILSTNIAETSLTLEGVVYVIDSGFSKQKFYNPIS 380
Query: 218 NFTSLKLCWASKKTA 262
+ SL + SK +A
Sbjct: 381 DIESLVVAPISKASA 395
>At5g04895.1 68418.m00514 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579;contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain, PF00035: Double-stranded RNA binding
motif
Length = 581
Score = 56.4 bits (130), Expect = 2e-08
Identities = 29/65 (44%), Positives = 41/65 (63%)
Frame = +2
Query: 68 EQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVLEADAITNFTSLKLCWA 247
EQ +F+RAP RKI+L+TN+AE+SIT+ D+ +VVD K DA+ N L W
Sbjct: 5 EQRLIFERAPPNIRKIVLATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWI 64
Query: 248 SKKTA 262
S+ +A
Sbjct: 65 SQASA 69
Score = 35.5 bits (78), Expect = 0.031
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +1
Query: 331 YDSLRDECPPEIVRCPLERLALLAKMLDMGPPSDILALAMDPPDMSNIHRTVLVLKEIG 507
YD+ + PE++R PL L L K L + ++ L+ A+ P+ + + LK IG
Sbjct: 93 YDAFAEYQLPELLRTPLNSLCLQIKSLQVESIAEFLSAALQAPESLAVQNAIGFLKMIG 151
Score = 34.3 bits (75), Expect = 0.071
Identities = 10/32 (31%), Positives = 24/32 (75%)
Frame = +3
Query: 552 DLTYMGRIMAKLPIDVRASKLIVLGYVYGCLD 647
+LT +G++++ LP+D + K++++G ++ C D
Sbjct: 158 NLTDLGKLLSILPVDPKLGKMLIMGAIFRCFD 189
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 55.2 bits (127), Expect = 4e-08
Identities = 29/77 (37%), Positives = 45/77 (58%)
Frame = +2
Query: 35 VLPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVLEADAI 214
+ PLH ++ + QVRVF P R+ I+STNIAE+S+TV + YV+D +K + +
Sbjct: 250 IYPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDSGYVKQRQYNPS 309
Query: 215 TNFTSLKLCWASKKTAS 265
+ SL + SK A+
Sbjct: 310 SGMFSLDVIQISKVQAN 326
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 54.4 bits (125), Expect = 6e-08
Identities = 24/48 (50%), Positives = 36/48 (75%)
Frame = +2
Query: 35 VLPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVD 178
+LP++S + AD Q ++FQ+ G RK I++TNIAE+S+TV I YV+D
Sbjct: 777 ILPIYSQLPADLQAKIFQKPEDGARKCIVATNIAETSLTVDGIYYVID 824
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 549 GDLTYMGRIMAKLPIDVRASKLIVLGYVYGCLD 647
G LT +G M + P+D +K++++G C+D
Sbjct: 939 GGLTDLGWKMVEFPLDPPLAKMLLMGERLDCID 971
>At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00575: S1 RNA binding domain
Length = 1168
Score = 54.0 bits (124), Expect = 8e-08
Identities = 22/48 (45%), Positives = 36/48 (75%)
Frame = +2
Query: 35 VLPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVD 178
+LP++S + ++ Q R+F P G RK++++TNIAE+S+T+ I YVVD
Sbjct: 759 ILPVYSALPSEMQSRIFDPPPPGKRKVVVATNIAEASLTIDGIYYVVD 806
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 546 DGDLTYMGRIMAKLPIDVRASKLIVLGYVYGCLD 647
+G LT +GR MA+ P++ SK+++ GC D
Sbjct: 920 EGLLTKLGRKMAEFPLEPPLSKMLLASVDLGCSD 953
>At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family
protein similar to SP|Q28141 ATP-dependent RNA helicase
A (Nuclear DNA helicase II) (DEAD-box protein 9) {Bos
taurus}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1015
Score = 51.6 bits (118), Expect = 4e-07
Identities = 27/73 (36%), Positives = 40/73 (54%)
Frame = +2
Query: 44 LHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVLEADAITNF 223
LH +I EQ + RK+IL+TNIAESS+T+P + YV+D C + D
Sbjct: 302 LHRSIDT-EQALAAMKICRSRRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDPSRKR 360
Query: 224 TSLKLCWASKKTA 262
+++L W S+ A
Sbjct: 361 DAVQLVWVSRSQA 373
Score = 30.7 bits (66), Expect = 0.87
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +1
Query: 313 LVTDKFYDSLRDECPPEIVRCPLERLALLAKMLDMGPPSD---ILALAMDPPDMSNIHRT 483
LV F++ L + PP I++ L + L + +D +LA AMDPPD +
Sbjct: 391 LVPSAFFNKLEEHEPPSILKLSLRQQVLHICCTESRAINDANALLAKAMDPPDPDVVDDA 450
Query: 484 VLVLKEI 504
+ +L I
Sbjct: 451 LRMLLSI 457
>At2g47250.1 68415.m05900 RNA helicase, putative similar to
SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
(Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 729
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 7/55 (12%)
Frame = +2
Query: 35 VLPLHSTITADEQVRVFQRAPL-------GHRKIILSTNIAESSITVPDIKYVVD 178
V+PL+ST+ Q ++F AP+ RKI++STNIAE+S+T+ I YV+D
Sbjct: 315 VVPLYSTLPPAMQQKIFDPAPVPLTEGGPAGRKIVVSTNIAETSLTIDGIVYVID 369
Score = 31.9 bits (69), Expect = 0.38
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +3
Query: 546 DGDLTYMGRIMAKLPIDVRASKLIVLGYVYGC 641
+G+LT G IM++ P+D + SK++++ + C
Sbjct: 483 EGNLTKTGEIMSEFPLDPQMSKMLIVSPEFNC 514
>At3g62310.1 68416.m07000 RNA helicase, putative similar to
SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
(Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 726
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 7/55 (12%)
Frame = +2
Query: 35 VLPLHSTITADEQVRVFQRAPLG-------HRKIILSTNIAESSITVPDIKYVVD 178
V+PL+ST+ Q ++F AP RKI++STNIAE+S+T+ I YV+D
Sbjct: 311 VVPLYSTLPPAMQQKIFDPAPEPVTEGGPPGRKIVVSTNIAETSLTIDGIVYVID 365
Score = 32.3 bits (70), Expect = 0.29
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +3
Query: 546 DGDLTYMGRIMAKLPIDVRASKLIVLGYVYGC 641
DG+LT G IM++ P+D + +K++++ + C
Sbjct: 479 DGNLTKTGEIMSEFPLDPQMAKMLIVSPEFNC 510
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 32.3 bits (70), Expect = 0.29
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +2
Query: 5 TRECANYKWWVLPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDF 181
TR+ W L +H + E+ V G I+ +T++A + V D+KYV+++
Sbjct: 361 TRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINY 419
>At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative
Length = 953
Score = 31.1 bits (67), Expect = 0.66
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 44 LHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVV 175
LH + +D++ + G +I+LST + E + VPD +V
Sbjct: 802 LHGRMKSDDKEEALNKFRSGETQILLSTQVIEIGVDVPDASMMV 845
>At1g75010.1 68414.m08709 MORN (Membrane Occupation and Recognition
Nexus) repeat-containing protein
/phosphatidylinositol-4-phosphate 5-kinase-related low
similarity to phosphatidylinositol-4-phosphate 5-kinase
AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains
Pfam profile PF02493: MORN repeat
Length = 712
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 501 NWSLKK--TLDNEWSSSDGDLTYMGRIMAKLPIDVRASK 611
NWS+ + ++ +W + GD + + LP+ VR SK
Sbjct: 439 NWSMDQGYQIEQKWQADSGDTAVLSLGIVNLPVGVRPSK 477
>At5g45510.1 68418.m05590 leucine-rich repeat family protein contains
leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 1222
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +2
Query: 35 VLPLHSTITADEQVRVFQRAPLGHRKIILS-TNIAESSITVPDIKYVVDFCLMKVLEADA 211
+L L T + E + V L + + LS TN++E + T+ D+ + + L + DA
Sbjct: 839 ILDLSGTTSLVEMLEVCFEDKLELKTLNLSGTNLSELATTIEDLSSLNELLLRDCINLDA 898
Query: 212 ITNFTSLK 235
I N L+
Sbjct: 899 IPNIEKLE 906
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 29.1 bits (62), Expect = 2.7
Identities = 9/46 (19%), Positives = 29/46 (63%)
Frame = +2
Query: 44 LHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDF 181
+HS ++ +E++ ++ GH++I+++T++ I + + V+++
Sbjct: 318 IHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINY 363
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 29.1 bits (62), Expect = 2.7
Identities = 9/46 (19%), Positives = 29/46 (63%)
Frame = +2
Query: 44 LHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDF 181
+HS ++ +E++ ++ GH++I+++T++ I + + V+++
Sbjct: 235 IHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINY 280
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 29.1 bits (62), Expect = 2.7
Identities = 9/46 (19%), Positives = 29/46 (63%)
Frame = +2
Query: 44 LHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDF 181
+HS ++ +E++ ++ GH++I+++T++ I + + V+++
Sbjct: 318 IHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINY 363
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = +2
Query: 44 LHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDF 181
LH I+ ++ R GH I+++T++A + VP++ ++ +
Sbjct: 378 LHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHY 423
>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1277
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 395 YSLRCWIWVRPVISWRWPWTHLICLTY 475
YSL C++ V P +W W W+ LI Y
Sbjct: 862 YSLLCFLHVEPWCNWAW-WSKLIQKPY 887
>At3g59160.1 68416.m06596 F-box family protein contains F-box domain
Pfam:PF00646
Length = 464
Score = 27.9 bits (59), Expect = 6.1
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +1
Query: 382 ERLALLAKMLDMGPPSDILALAMDPPDMSNIHRTVLVLKE--IGV*KRL*TMSGVPRMVT 555
E L L + GPP D+ + + P + +H ++ E IG K L + +V
Sbjct: 166 ETLVKLTLKIRDGPPIDVKHVHL--PKLKTLHLESVMFDEEDIGFSKLLSGCPELEELVL 223
Query: 556 SLIWGVLWQNC 588
IW +W +C
Sbjct: 224 HHIWSCVWTSC 234
>At5g14900.1 68418.m01748 helicase associated (HA2)
domain-containing protein similar to SP|P53131 Pre-mRNA
splicing factor RNA helicase PRP43 (Helicase JA1)
{Saccharomyces cerevisiae}; contains Pfam profile
PF04408: Helicase associated domain (HA2)
Length = 301
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = +3
Query: 546 DGDLTYMGRIMAKLPIDVRASKLIVLGYVYGC 641
D +LT G +M++ P+D + +K++++ + C
Sbjct: 49 DCNLTKTGEMMSEFPLDPQMAKMLIVSPQFNC 80
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,132,245
Number of Sequences: 28952
Number of extensions: 280623
Number of successful extensions: 703
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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