Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00697
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    26   4.9  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   8.6  

>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 144 KMNEEDQHMPPAKKPKVDNSVEDVDFTQDVSIVDNNKTLR*VLINILI 287
           KM       P AKK  +DN    +  +  V+I+  N   +  LI +LI
Sbjct: 693 KMTNASYTYPNAKKKSLDNVTVGLSLSSRVAILGPNGAGKSTLIKVLI 740


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 743  NSFCFSSSSKYFLYARHGMALMGISC 666
            +S CF SSS++F YA    A     C
Sbjct: 1924 DSTCFPSSSRWFQYAPSSTACQMFDC 1949


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,989,968
Number of Sequences: 5004
Number of extensions: 61496
Number of successful extensions: 162
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)