Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00697
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1127 + 24496838-24497590                                         31   1.3  
11_04_0345 + 16606739-16607055,16607129-16607462,16609029-16609631     29   3.9  
04_03_0501 + 16593710-16593886,16595255-16595311,16595748-165974...    29   3.9  
12_01_0707 - 6133561-6133947                                           28   6.8  
10_08_1017 - 22268957-22269279,22269784-22269934,22270084-222701...    28   6.8  
03_02_0039 - 5213699-5214775,5214815-5215093,5215300-5215776,521...    28   9.0  

>08_02_1127 + 24496838-24497590
          Length = 250

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/47 (40%), Positives = 22/47 (46%)
 Frame = -2

Query: 676 EYRAAGCSLSRGSKAWRACRPWWSGACRPACRCSVGPSSNPAEALRS 536
           E RAA CSL+ G    R CR  WS   R    CS G +     A R+
Sbjct: 136 EQRAACCSLAGGGGCRRPCR--WSRPSRSRRPCSSGSAPGVRTATRA 180


>11_04_0345 + 16606739-16607055,16607129-16607462,16609029-16609631
          Length = 417

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 609 GAVHVDRHAAVVSDHHPIQRKHFEVVG 529
           G VH D H  V+SD   + R+ +E+VG
Sbjct: 109 GLVHHDHHGGVISDMGDMVREGYELVG 135


>04_03_0501 +
           16593710-16593886,16595255-16595311,16595748-16597469,
           16599045-16599326,16599521-16599637,16599655-16600365
          Length = 1021

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 711 LSVRKTRDGADGNIVPPDVPFPEEVRLGERAD 616
           + +  +RDG+   + P   PF +E+R+ E  D
Sbjct: 444 IGMTPSRDGSSFGLTPKSTPFRDELRINEEVD 475


>12_01_0707 - 6133561-6133947
          Length = 128

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -2

Query: 661 GCSLSRGSKAWRACRPWWSGACRPACRCSVGPSSNPAEALRSGWRP 524
           GC    G       RPWWS  C   C  S    + P  A+++ WRP
Sbjct: 47  GCGGIDGGGWLARQRPWWSRRCGGGCAASW--VARP--AVQASWRP 88


>10_08_1017 -
           22268957-22269279,22269784-22269934,22270084-22270164,
           22271296-22271374,22273296-22273345
          Length = 227

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 12/64 (18%)
 Frame = -2

Query: 679 WEYRAAGCSLSRGSKAWRACRPWWSGA------------CRPACRCSVGPSSNPAEALRS 536
           WE R   C    G K W + R W  G                ACRC      + A+    
Sbjct: 56  WELRLVKCIQDYGLKGWGSARRWMGGGVGFLYLLAFKAEAVAACRCRSPRLISVADRRGK 115

Query: 535 GWRP 524
           GW P
Sbjct: 116 GWSP 119


>03_02_0039 -
           5213699-5214775,5214815-5215093,5215300-5215776,
           5216073-5216438
          Length = 732

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +3

Query: 651 REHPAA---RYSHQRHPVSCVQKVLRGGRKTKGI 743
           R HP A   +++HQRH   CV+ + RG  K  GI
Sbjct: 71  RHHPEAFIIKFAHQRH---CVEALKRGSVKRHGI 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,787,006
Number of Sequences: 37544
Number of extensions: 417727
Number of successful extensions: 1211
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)