Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00697
         (743 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44622| Best HMM Match : dsrm (HMM E-Value=3.1e-16)                  73   2e-13
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)                  31   0.99 
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)                      31   0.99 
SB_3737| Best HMM Match : DM (HMM E-Value=6.1e-19)                     28   7.0  
SB_30324| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_44622| Best HMM Match : dsrm (HMM E-Value=3.1e-16)
          Length = 724

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 28/50 (56%), Positives = 38/50 (76%)
 Frame = +1

Query: 547 LPLDWMMVRHYSGMPVYMHRSTRVCTLSKPYFLGKGNIRRHDIPISAIPC 696
           LP  W+ + H SG  +Y+HR TRVCT S+PY +G G++R+HDIP +AIPC
Sbjct: 52  LPDGWLALNHRSGGIIYLHRPTRVCTWSRPYHIGSGSVRKHDIPAAAIPC 101


>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
          Length = 687

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 702 RKTRDGADGNIVPPDVPFPEEVRLGER 622
           R + +GA     PP +P+P+  RLGER
Sbjct: 253 RPSHEGASREERPPGIPYPDNPRLGER 279


>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 1282

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 702 RKTRDGADGNIVPPDVPFPEEVRLGER 622
           R + +GA     PP +P+P+  RLGER
Sbjct: 19  RPSHEGASREERPPGIPYPDNPRLGER 45


>SB_3737| Best HMM Match : DM (HMM E-Value=6.1e-19)
          Length = 312

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = +3

Query: 111 DY*LTFSVTSNKMNEEDQHMPPAKKPKVD 197
           D  +T ++T+ K +++D  +PP K+PK++
Sbjct: 103 DIPMTQTITTGKTHQDDIIVPPMKRPKLE 131


>SB_30324| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -3

Query: 708 SVRKTRDGADGNIVPPD 658
           S ++ RDGA G+++PPD
Sbjct: 111 SCKEIRDGASGHVIPPD 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,511,966
Number of Sequences: 59808
Number of extensions: 454737
Number of successful extensions: 1540
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)