Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00697
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   1.3  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   7.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   9.2  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 636 RLGERADPGGAVHVDRHAAVVSDHHPI 556
           R   R + GG  H+D H    ++HH I
Sbjct: 263 RDSRRKNYGGVYHLDNHHVHHANHHAI 289


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 582 AVVSDHHPIQRKHFEVV 532
           A V++H  +QR+ F+VV
Sbjct: 331 ACVNEHQVLQRESFDVV 347


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 651 REHPAARYSHQRHPVSCVQK 710
           R++PA R  +Q+  +S +QK
Sbjct: 603 RDNPAERLGYQKGGISEIQK 622


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,821
Number of Sequences: 438
Number of extensions: 3863
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)