Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00697
(743 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41260.2 68415.m05096 glycine-rich protein / late embryogenes... 33 0.20
At2g41260.1 68415.m05095 glycine-rich protein / late embryogenes... 33 0.20
At5g62000.3 68418.m07784 transcriptional factor B3 family protei... 29 3.3
At5g62000.2 68418.m07783 transcriptional factor B3 family protei... 29 3.3
At5g62000.1 68418.m07782 transcriptional factor B3 family protei... 29 3.3
At4g10310.1 68417.m01696 sodium transporter (HKT1) identical to ... 29 3.3
At1g61850.1 68414.m06979 patatin family protein similar to membr... 29 3.3
At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to vil... 29 4.3
At4g17330.1 68417.m02600 agenet domain-containing protein contai... 28 5.7
At5g16850.1 68418.m01974 telomerase reverse transcriptase (TERT)... 28 7.5
At4g38890.1 68417.m05508 dihydrouridine synthase family protein ... 27 9.9
At3g49040.1 68416.m05357 F-box family protein contains F-box dom... 27 9.9
At2g41700.1 68415.m05151 ABC transporter family protein similar ... 27 9.9
At1g64810.1 68414.m07348 expressed protein contains Pfam PF05634... 27 9.9
>At2g41260.2 68415.m05096 glycine-rich protein / late embryogenesis
abundant protein (M17) identical to late-embryogenesis
abundant M17 protein GI:3342551 from [Arabidopsis
thaliana]
Length = 280
Score = 33.1 bits (72), Expect = 0.20
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 646 RGSKAWRACRPWWSGACRPACR 581
RG W C WW G CR CR
Sbjct: 75 RGGCRWGCCGGWWRGRCRYCCR 96
Score = 33.1 bits (72), Expect = 0.20
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 646 RGSKAWRACRPWWSGACRPACR 581
RG W C WW G CR CR
Sbjct: 130 RGGCRWGCCGGWWRGRCRYCCR 151
Score = 33.1 bits (72), Expect = 0.20
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 646 RGSKAWRACRPWWSGACRPACR 581
RG W C WW G CR CR
Sbjct: 185 RGGCRWGCCGGWWRGRCRYCCR 206
Score = 33.1 bits (72), Expect = 0.20
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 646 RGSKAWRACRPWWSGACRPACR 581
RG W C WW G CR CR
Sbjct: 240 RGGCRWGCCGGWWRGRCRYCCR 261
>At2g41260.1 68415.m05095 glycine-rich protein / late embryogenesis
abundant protein (M17) identical to late-embryogenesis
abundant M17 protein GI:3342551 from [Arabidopsis
thaliana]
Length = 225
Score = 33.1 bits (72), Expect = 0.20
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 646 RGSKAWRACRPWWSGACRPACR 581
RG W C WW G CR CR
Sbjct: 75 RGGCRWGCCGGWWRGRCRYCCR 96
Score = 33.1 bits (72), Expect = 0.20
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 646 RGSKAWRACRPWWSGACRPACR 581
RG W C WW G CR CR
Sbjct: 130 RGGCRWGCCGGWWRGRCRYCCR 151
Score = 33.1 bits (72), Expect = 0.20
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 646 RGSKAWRACRPWWSGACRPACR 581
RG W C WW G CR CR
Sbjct: 185 RGGCRWGCCGGWWRGRCRYCCR 206
>At5g62000.3 68418.m07784 transcriptional factor B3 family protein /
auxin-responsive factor, putative (ARF1) contains Pfam
profile: PF02362 B3 DNA binding domain; identical to
cDNA ARF1 (auxin response factor) binding protein
GI:2245393
Length = 859
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = +1
Query: 502 KEIVLEDKGANHFEVLPLDWMMVRHYSGMPVYMHRSTRVCTLSKPYFLGKGNIRRHDIPI 681
K I+ + +G F+ L W M+ +SG+ + +H S +V + G+ N++ + P+
Sbjct: 541 KRILSDSEGK--FDYLANQWQMI--HSGLSLKLHESPKVPAATDASLQGRCNVKYSEYPV 596
>At5g62000.2 68418.m07783 transcriptional factor B3 family protein /
auxin-responsive factor, putative (ARF1) contains Pfam
profile: PF02362 B3 DNA binding domain; identical to
cDNA ARF1 (auxin response factor) binding protein
GI:2245393
Length = 859
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = +1
Query: 502 KEIVLEDKGANHFEVLPLDWMMVRHYSGMPVYMHRSTRVCTLSKPYFLGKGNIRRHDIPI 681
K I+ + +G F+ L W M+ +SG+ + +H S +V + G+ N++ + P+
Sbjct: 541 KRILSDSEGK--FDYLANQWQMI--HSGLSLKLHESPKVPAATDASLQGRCNVKYSEYPV 596
>At5g62000.1 68418.m07782 transcriptional factor B3 family protein /
auxin-responsive factor, putative (ARF1) contains Pfam
profile: PF02362 B3 DNA binding domain; identical to
cDNA ARF1 (auxin response factor) binding protein
GI:2245393
Length = 859
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = +1
Query: 502 KEIVLEDKGANHFEVLPLDWMMVRHYSGMPVYMHRSTRVCTLSKPYFLGKGNIRRHDIPI 681
K I+ + +G F+ L W M+ +SG+ + +H S +V + G+ N++ + P+
Sbjct: 541 KRILSDSEGK--FDYLANQWQMI--HSGLSLKLHESPKVPAATDASLQGRCNVKYSEYPV 596
>At4g10310.1 68417.m01696 sodium transporter (HKT1) identical to
sodium transporter AtHKT1 [Arabidopsis thaliana]
gi|7716474|gb|AAF68393
Length = 506
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -2
Query: 505 LSHYVCLLFRFRSALKALRKIFI*HFLYFIFGHTF*FSLSGLCILIIT 362
+ V + + RS L LR +F +F+YF+F FS G L IT
Sbjct: 1 MDRVVAKIAKIRSQLTKLRSLFFLYFIYFLF-----FSFLGFLALKIT 43
>At1g61850.1 68414.m06979 patatin family protein similar to
membrane-associated calcium-independent phospholipase A2
gamma; IPLA2 gamma [Homo sapiens] GI:8453174; contains
Patatin domain PF01734, PF00514:
Armadillo/beta-catenin-like repeat
Length = 1265
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -2
Query: 586 CRCSVGPSSNPAEALRSGWRPCLLKQFLSHYVCLLFRFRSALKAL 452
C S+G S P + GWR Q L C + R AL L
Sbjct: 716 CLVSIGSGSVPTRVRKGGWRYLDTGQVLIESACSVERVEEALSTL 760
>At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to villin
3 (VLN3) [Arabidopsis thaliana] GI:3415117
Length = 965
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +3
Query: 126 FSVTSNKMNEEDQHMPPAKKPKV----DNSVEDVDFTQDVSIVDNNK 254
F+ + K+ ED+ +P PK+ D VE +D S+++NNK
Sbjct: 234 FAPIARKVASEDEIIPETTPPKLYSIADGQVESIDGDLSKSMLENNK 280
>At4g17330.1 68417.m02600 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 1058
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 422 IEKMLDEDLPEGFKGAPKPKEK 487
IEK P+ FK APKPKEK
Sbjct: 899 IEKQTTISRPKTFKPAPKPKEK 920
>At5g16850.1 68418.m01974 telomerase reverse transcriptase (TERT)
identical to telomerase reverse transcriptase
[Arabidopsis thaliana] GI:5880683
Length = 1123
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 84 QISLNTCFIDY*LTFSVTSNKMNEEDQHMPPAKKPKVDNSVED 212
Q+S I + T SV NK +D PP K+ + ++V+D
Sbjct: 173 QVSGPPLCIKHKRTLSVHENKRKRDDNVQPPTKRQWLSSAVDD 215
>At4g38890.1 68417.m05508 dihydrouridine synthase family protein
contains Pfam domain, PF01207: Dihydrouridine synthase
(Dus)
Length = 700
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 422 IEKMLDEDLPEGFKGAPKPKEKAY 493
I +ML +PEGF APK K AY
Sbjct: 671 ISEMLLGKVPEGFTFAPKHKSNAY 694
>At3g49040.1 68416.m05357 F-box family protein contains F-box domain
Pfam:PF00646
Length = 415
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 245 IYNGHILSEINIFYRI-VHLWLLRWWHMLIFLI 150
I N +IL + R+ +HL L WW++L F++
Sbjct: 267 IENENILESLTSAKRLSIHLSPLEWWNLLTFML 299
>At2g41700.1 68415.m05151 ABC transporter family protein similar to
ATP-binding cassette transporter ABCA1 GI:18031705 from
[Arabidopsis thaliana]
Length = 1822
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -2
Query: 670 RAAGCSLSRGSKAWRACRPWWSGACRPACR 581
+ GCS+ S WR C+ + R ACR
Sbjct: 881 QCCGCSIISRSMFWRHCKALFIKRARSACR 910
>At1g64810.1 68414.m07348 expressed protein contains Pfam PF05634:
Arabidopsis thaliana protein of unknown function
(DUF794)
Length = 436
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/59 (33%), Positives = 27/59 (45%)
Frame = +3
Query: 144 KMNEEDQHMPPAKKPKVDNSVEDVDFTQDVSIVDNNKTLR*VLINILIM*PLLSCSSCG 320
+M E Q PP V N V D ++DN K L L +L + P+ +CS CG
Sbjct: 107 QMGIEKQLDPPKNGLLVPNLVPVAD-----QVIDNWKLLIKGLAQLLHVVPVFACSECG 160
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,698,276
Number of Sequences: 28952
Number of extensions: 324525
Number of successful extensions: 805
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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