Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00696
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    29   0.99 
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    27   2.3  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    27   4.0  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    26   5.3  

>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 398 FFSKFLIL**VLNNMKIYILQNFDNRICLED 490
           FF   ++L   L+N ++ IL+ + NR+C+ D
Sbjct: 380 FFDDMMLLLSNLSNARVAILEGYSNRLCIWD 410


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -3

Query: 482 GIFDYQNFVKCKFSY--YLELIKVLRILRKSLRMLQHFGLHR*RKTPSFRY 336
           G+ DYQ  +K  F Y   L+     + L +  R++        +KTP+++Y
Sbjct: 343 GLTDYQRVIKILFEYIRLLDQTNAHKFLFEETRIMSEAQFKTRQKTPAYQY 393


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 714 IAPFLNLTKRETHSSNCFFTH 776
           + PFL  T R+  S NCFF+H
Sbjct: 12  VCPFLR-TGRKCQSRNCFFSH 31


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -3

Query: 137 NCINRNRLVNLLTHSILIGLTDKIILILHW--VQPK*SPTHRTMTSC 3
           +CI  +RL  +LT S +IG T  I   + W  V P  S    T + C
Sbjct: 200 SCIIVHRLFQILTVSFVIGFTTFITSCIDWPAVTPHGSLAGVTKSQC 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,051,311
Number of Sequences: 5004
Number of extensions: 59114
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)