Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00696
         (781 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56210.1 68414.m06460 copper chaperone (CCH)-related low simi...    29   2.6  
At1g13460.2 68414.m01575 serine/threonine protein phosphatase 2A...    28   6.0  
At1g13460.1 68414.m01574 serine/threonine protein phosphatase 2A...    28   6.0  
At3g21650.1 68416.m02730 serine/threonine protein phosphatase 2A...    28   8.0  

>At1g56210.1 68414.m06460 copper chaperone (CCH)-related low
           similarity to copper homeostasis factor
           [GI:3168840][PMID:9701579] and farnesylated proteins
           ATFP3 [GI:4097547] and GMFP7 [Glycine max][GI:4097573];
           contains PF00403 Heavy-metal-associated domain
          Length = 364

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = -2

Query: 93  DIDRPHRQNNTHSTLGTTQIKSNPPNHDLVP 1
           D DRP  Q N H    T    +NPP HDL P
Sbjct: 261 DYDRPINQINDHHITTT----NNPPRHDLYP 287


>At1g13460.2 68414.m01575 serine/threonine protein phosphatase 2A
           (PP2A) regulatory subunit B', putative similar to
           SWISS-PROT:Q28653 serine/threonine protein phosphatase
           2A, 56 kDa regulatory subunit, delta isoform (PP2A, B
           subunit, B' delta isoform, PP2A, B subunit, B56 delta
           isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B
           subunit, R5 delta isoform, PP2A, B subunit, B'-gamma)
           [Oryctolagus cuniculus]; contains Pfam domain, PF01603:
           Protein phosphatase 2A regulatory B subunit (B56 family)
          Length = 492

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
 Frame = -1

Query: 313 PK*R*VYMSRTSYNIIKF-----KRLYQILKGILKTWPLKISKNDYLIIN 179
           PK   +Y  + SY I +F     K    +++G+LK+WP+  S  + + +N
Sbjct: 304 PKSLQMYHQQLSYCITQFVEKDCKLADTVIRGLLKSWPVTNSSKEVMFLN 353


>At1g13460.1 68414.m01574 serine/threonine protein phosphatase 2A
           (PP2A) regulatory subunit B', putative similar to
           SWISS-PROT:Q28653 serine/threonine protein phosphatase
           2A, 56 kDa regulatory subunit, delta isoform (PP2A, B
           subunit, B' delta isoform, PP2A, B subunit, B56 delta
           isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B
           subunit, R5 delta isoform, PP2A, B subunit, B'-gamma)
           [Oryctolagus cuniculus]; contains Pfam domain, PF01603:
           Protein phosphatase 2A regulatory B subunit (B56 family)
          Length = 492

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
 Frame = -1

Query: 313 PK*R*VYMSRTSYNIIKF-----KRLYQILKGILKTWPLKISKNDYLIIN 179
           PK   +Y  + SY I +F     K    +++G+LK+WP+  S  + + +N
Sbjct: 304 PKSLQMYHQQLSYCITQFVEKDCKLADTVIRGLLKSWPVTNSSKEVMFLN 353


>At3g21650.1 68416.m02730 serine/threonine protein phosphatase 2A
           (PP2A) regulatory subunit B', putative similar to
           SWISS-PROT:Q28653 serine/threonine protein phosphatase
           2A, 56 kDa regulatory subunit, delta isoform (PP2A, B
           subunit, B' delta isoform, PP2A, B subunit, B56 delta
           isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B
           subunit, R5 delta isoform, PP2A, B subunit, B'-gamma)
           [Oryctolagus cuniculus]; contains Pfam domain, PF01603:
           Protein phosphatase 2A regulatory B subunit (B56 family)
          Length = 546

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = -1

Query: 313 PK*R*VYMSRTSYNIIKF-----KRLYQILKGILKTWPLKISKNDYLII 182
           PK   VY  + SY I++F     K    +++G+LK WP+  S  + + +
Sbjct: 334 PKCSSVYHQQLSYCIVQFVEKDFKLADTVIRGLLKYWPVTNSSKEVMFL 382


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,112,858
Number of Sequences: 28952
Number of extensions: 273937
Number of successful extensions: 500
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)