Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00695
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 121 1e-28
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar... 40 3e-04
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo... 32 0.076
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 28 1.6
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 27 2.2
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 27 2.9
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 26 5.0
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ... 26 6.6
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 121 bits (291), Expect = 1e-28
Identities = 50/80 (62%), Positives = 64/80 (80%)
Frame = +3
Query: 510 EDGLKAGLAFPTGCSRNHCAAHYTPNTGDTTVLEYDDVVKIDFGTHINGRIIDCAFTLHF 689
EDGLK+G+ FPTG S NHCAAHYTPN GDTT+L+ DV+K+D G H+NGRI+D AFT+ F
Sbjct: 158 EDGLKSGIGFPTGVSLNHCAAHYTPNAGDTTILKEKDVMKVDIGVHVNGRIVDSAFTMSF 217
Query: 690 NPRYDPLVKGVQEATEAGIK 749
+P+YD L+ V+ AT GI+
Sbjct: 218 DPQYDNLLAAVKAATNKGIE 237
Score = 71.7 bits (168), Expect = 1e-13
Identities = 33/66 (50%), Positives = 46/66 (69%)
Frame = +1
Query: 328 RFTSEEKRALDRLHKDIYQEIRHAAEAHRQTRKHIRNWIKPGMTMIDICEELEKTARRLI 507
R T EEKRALDR + D Y ++R AAE HRQ R++ ++ IKPGM+M+D+ +E T R L+
Sbjct: 97 RTTDEEKRALDRQNFDQYNDLRRAAEVHRQARQYAQSVIKPGMSMMDVVNTIENTTRALV 156
Query: 508 GKMGSK 525
+ G K
Sbjct: 157 EEDGLK 162
>SPAC23H4.09 |cdb4||curved DNA-binding protein
Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 40.3 bits (90), Expect = 3e-04
Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +3
Query: 528 GLAFPTGCSRNHCAAHYTPNTGD---TTVLEYDDVVKIDFGTHING 656
G+AFPT S N AAH +P D L+ DVVKI G HI+G
Sbjct: 76 GIAFPTAVSPNDMAAHLSPLKSDPEANLALKSGDVVKILLGAHIDG 121
>SPBC23E6.05 |arx1||ribosomal export complex Arx1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 32.3 bits (70), Expect = 0.076
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Frame = +3
Query: 504 YWEDGLKAGLAFPTGCSRNHCAAHYTP-------NTGDTTVLEYDDVVKIDFGTHINGRI 662
Y + G+A PT N+CA +Y P ++ L+ DV KI G H +G
Sbjct: 64 YKSQRFEKGIAEPTSICVNNCAYNYAPGPESVIAGNDNSYHLQVGDVTKISMGLHFDGYT 123
Query: 663 IDCAFTLHFNPRYDP 707
+ T+ P P
Sbjct: 124 ALISHTIVVTPPPQP 138
>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 605 NCCITCVRSIMCRTVVAAASCGESQTCFEPIFPIRRLAV 489
+CCI C + ++ R ++ A S+ F+ IRRL +
Sbjct: 3 SCCIFCAQFVLNRNLLEANKYKLSEITFKVYISIRRLLI 41
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 27.5 bits (58), Expect = 2.2
Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -3
Query: 621 HHHIRELLYHLC*EYNVPHSGCG-CILWGKPDLL*AHLPNKTS-RSLL*LFTNI 466
HH I +L+YH PH C CI G +LP TS R+LL LFT+I
Sbjct: 262 HHKIEDLVYHA-----YPHGPCSDCIYVG-------NLPWATSDRNLLDLFTDI 303
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 456 HARLDPIADVFSCLPVGFSSMS 391
H LD I DVFSC PV + S
Sbjct: 194 HILLDFILDVFSCSPVNLKAQS 215
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +1
Query: 367 HKDIYQEIRHAAEAHRQTRKHIRNWIKPGMTMIDIC 474
+ D+ E+ + E+H +T +H + + P +ID+C
Sbjct: 386 YSDLRFELLYT-ESHSRTLRHEKRHVSPKSPLIDVC 420
>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 6.6
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = +3
Query: 510 EDGLKAGLAFPTGCSR--NHCAAHYTPNTGDTTVLEYDDVVKIDFGTHINGRIIDCAFTL 683
++ L GL+F T S N HY+P + +++ + D G D T
Sbjct: 354 KNNLFMGLSFETISSTGPNGAVIHYSPPATGSAIIDPTKIYLCDSGAQYKDGTTDVTRTW 413
Query: 684 HF 689
HF
Sbjct: 414 HF 415
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,000
Number of Sequences: 5004
Number of extensions: 50772
Number of successful extensions: 136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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