Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00695
(749 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1441 - 27116242-27116354,27116646-27116742,27116841-271170... 124 6e-29
12_02_1200 + 26937624-26937674,26937913-26938005,26938582-269387... 123 1e-28
11_05_0099 - 19044772-19044837,19044896-19045051,19045529-190456... 31 0.98
05_04_0299 - 19958776-19958858,19958883-19959012,19960131-199601... 29 3.0
03_05_1014 - 29687343-29687410,29688054-29688191,29689246-296892... 29 3.0
01_06_1193 - 35306608-35306777,35306869-35306890,35306988-353069... 29 3.0
09_03_0099 + 12353777-12353877,12354022-12354220,12354720-123548... 29 3.9
05_03_0633 + 16416913-16417009,16417976-16418060,16418398-164185... 29 3.9
12_02_0604 + 20920609-20922144 28 6.9
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 28 6.9
10_01_0041 + 505155-506339 28 9.1
07_03_0151 - 14465479-14465675,14466280-14466401,14466934-144670... 28 9.1
>08_02_1441 -
27116242-27116354,27116646-27116742,27116841-27117058,
27117279-27117422,27117512-27117608,27117932-27118026,
27118140-27118231,27118326-27118471,27118565-27118664,
27118857-27118964,27119040-27119085,27119210-27119345,
27119847-27120044
Length = 529
Score = 124 bits (300), Expect = 6e-29
Identities = 53/80 (66%), Positives = 68/80 (85%)
Frame = +3
Query: 510 EDGLKAGLAFPTGCSRNHCAAHYTPNTGDTTVLEYDDVVKIDFGTHINGRIIDCAFTLHF 689
E+GL+AG+AFPTGCS N AAH+TPN GD TVL+YDDV+K+DFGTHING I+D AFT+ F
Sbjct: 228 ENGLEAGIAFPTGCSLNCVAAHWTPNGGDKTVLQYDDVMKLDFGTHINGYIVDSAFTVAF 287
Query: 690 NPRYDPLVKGVQEATEAGIK 749
NP +DPL++ ++AT AG+K
Sbjct: 288 NPMFDPLLQASRDATNAGVK 307
Score = 84.2 bits (199), Expect = 1e-16
Identities = 44/88 (50%), Positives = 57/88 (64%)
Frame = +1
Query: 256 GNFPEGQIMDHGPAEGIDERTAKNRFTSEEKRALDRLHKDIYQEIRHAAEAHRQTRKHIR 435
G FPEG+I + D+ R TSEEKR L+RL K +Y +R AAE HRQ RK++R
Sbjct: 150 GEFPEGEIQHYK-----DDNLW--RTTSEEKRELERLQKPMYNAVRRAAEVHRQVRKYMR 202
Query: 436 NWIKPGMTMIDICEELEKTARRLIGKMG 519
+ +KPGM MID+CE LE R+LI + G
Sbjct: 203 SILKPGMLMIDLCETLENMVRKLIKENG 230
>12_02_1200 +
26937624-26937674,26937913-26938005,26938582-26938728,
26940299-26940379,26940711-26940849,26940977-26941013,
26941095-26941202,26941434-26941533,26941638-26941783,
26941862-26941953,26942086-26942180,26942435-26942531,
26942623-26942766,26942912-26943129,26943213-26943323
Length = 552
Score = 123 bits (297), Expect = 1e-28
Identities = 51/80 (63%), Positives = 68/80 (85%)
Frame = +3
Query: 510 EDGLKAGLAFPTGCSRNHCAAHYTPNTGDTTVLEYDDVVKIDFGTHINGRIIDCAFTLHF 689
E+GL+AG+AFPTGCS N AAH+TPN+GD TVL+YDDV+K+DFGTHI+G I+DCAFT+ F
Sbjct: 284 ENGLQAGIAFPTGCSLNWVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGYIVDCAFTVAF 343
Query: 690 NPRYDPLVKGVQEATEAGIK 749
NP +D L++ ++AT G+K
Sbjct: 344 NPMFDSLLQASKDATNTGVK 363
Score = 87.4 bits (207), Expect = 1e-17
Identities = 45/88 (51%), Positives = 58/88 (65%)
Frame = +1
Query: 256 GNFPEGQIMDHGPAEGIDERTAKNRFTSEEKRALDRLHKDIYQEIRHAAEAHRQTRKHIR 435
G+FPEG+I + D+ R TSEEKR L+RL K +Y +R AAE HRQ RKH+R
Sbjct: 206 GDFPEGEIQQYK-----DDNLW--RTTSEEKRELERLQKPMYNAVRRAAEVHRQVRKHMR 258
Query: 436 NWIKPGMTMIDICEELEKTARRLIGKMG 519
+ +KPGM MID+CE LE R+LI + G
Sbjct: 259 SILKPGMLMIDLCETLENMVRKLIKENG 286
>11_05_0099 -
19044772-19044837,19044896-19045051,19045529-19045653,
19045773-19045844,19045947-19046051,19046509-19046563,
19047334-19047414,19047499-19047633,19048279-19048342,
19048844-19048911,19049082-19049168,19050247-19050501,
19050616-19050738,19050866-19051150,19051712-19051851,
19052385-19052445,19052537-19052637,19052807-19052870,
19053020-19053127
Length = 716
Score = 31.1 bits (67), Expect = 0.98
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Frame = +3
Query: 528 GLAFPTGCS--RNHCAAHYTPNTGDTTVLEYDDVVKIDFGTHINGRIIDCAFTLHF 689
GL+FPT S N HY+P L+ D + D G D T+HF
Sbjct: 456 GLSFPTISSVGPNAAVIHYSPEASSCAELDADKIYLCDSGAQYLDGTTDITRTVHF 511
>05_04_0299 -
19958776-19958858,19958883-19959012,19960131-19960175,
19960252-19960370,19960450-19960543,19961824-19961985,
19962117-19962266,19962472-19962537,19962934-19962981,
19963654-19963866,19963953-19964078,19964155-19964232,
19964600-19964671,19965522-19965953,19966863-19966925,
19967497-19967898
Length = 760
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +1
Query: 310 ERTAKNRFTSEEKRALDRLHKDIYQE 387
+RT K R+ SE+KR LDR HK++ ++
Sbjct: 60 KRTGKRRYPSEKKR-LDRRHKELLRK 84
>03_05_1014 -
29687343-29687410,29688054-29688191,29689246-29689294,
29689623-29689728,29690184-29690332,29690840-29690921,
29691308-29691360,29691644-29691729,29691855-29691909,
29692179-29692579,29693564-29693660,29694191-29694322,
29694426-29694476,29694659-29694751,29694917-29694992,
29695711-29695856,29696009-29696043,29696056-29696107,
29696290-29696401,29696617-29696813,29697456-29697560,
29697667-29697819,29698317-29698424,29698608-29698752,
29699374-29699432,29701397-29701441,29701677-29701730,
29701901-29702113,29702873-29702958,29704492-29704572,
29704670-29704729,29705599-29705644,29706212-29706286,
29706376-29706512,29708306-29708366,29708726-29708743,
29709710-29709743,29709811-29709902,29709997-29710029
Length = 1260
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -3
Query: 435 ADVFSCLPVGFSSMSDLLINIFM*SIKSSFLLTCKTIFCSSLINTLSRTMV 283
A V +CL +G M+ L N + S+ S L C T+ CS TL+ M+
Sbjct: 361 AVVTTCLALGTKRMARL--NAIVRSLPSVETLGCTTVICSDKTGTLTTNMM 409
>01_06_1193 -
35306608-35306777,35306869-35306890,35306988-35306996,
35307107-35307115,35307470-35307491,35307981-35308784,
35308861-35309088,35309250-35309335,35309449-35309530,
35309630-35309778,35309992-35310105,35310961-35311059,
35311243-35311321,35311873-35312021
Length = 673
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/47 (27%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +2
Query: 269 RVKLWTMVLLRVLMRELQKIV-LQVRRKELLIDYIKIFIRRSDMLLK 406
+V+ + + LL +M+ + V L+V + +L + +KI +++DML++
Sbjct: 69 KVQFYALTLLETMMKNCGEYVQLEVAEQHVLQEMVKIIQKKNDMLVR 115
>09_03_0099 +
12353777-12353877,12354022-12354220,12354720-12354845,
12354935-12355093,12356286-12356415,12356551-12356592,
12357507-12357806,12357933-12357984,12358157-12358234,
12359133-12359229
Length = 427
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/102 (20%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Frame = +1
Query: 256 GNFPEGQIMDHGPAEGIDERTAKNRFTSEEKRALDRLHKDIYQEIRHAAEAHRQTRKHIR 435
GNF E + +D ++ + ++ ++ ++ +Q++ +++ + ++ I
Sbjct: 130 GNFVEYARGNDIKDAWLDSVEVDTKYAEKVQKKREKEKEEEFQDL--SSDDIGKIKRRIS 187
Query: 436 NWIKPGMTMIDICEELEKTARRLIGKM--GSKQVWLSPQDAA 555
N ++PG T+I + L+ T+ GKM G+K+++ +AA
Sbjct: 188 NILEPGETIIQALKRLKNTSSDKRGKMTEGTKRIFDELTEAA 229
>05_03_0633 +
16416913-16417009,16417976-16418060,16418398-16418551,
16418808-16419023,16419105-16419241,16419317-16419408,
16419622-16419804,16421722-16421819,16422021-16422070,
16424605-16424756,16424944-16425069,16426315-16426523
Length = 532
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +1
Query: 343 EKRALDRLHKDIYQEIRHAAEAHRQTRKHIRNWIKPGMTMIDICEELEKTARRLIG 510
E++ LD D+ + + AA+ K + + KP ++DICE+ + R +G
Sbjct: 9 EEKELDLSSSDVVTKYKDAADIINNALKLVVSLCKPKAKIVDICEKGDSYIRDDMG 64
>12_02_0604 + 20920609-20922144
Length = 511
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 340 EEKRALDRLHKDIYQEIRHAAEAHRQTRKHIRNWIKPGMT 459
E++ +D L KDI Q AEAHR+ + I W+ T
Sbjct: 457 EKREKIDVLIKDIEQLNLEVAEAHRKRKGGIWAWLYAATT 496
>03_01_0423 +
3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +1
Query: 307 DERTAKNRFTSEEK-RALDRLHKDIYQEIRHAAEAHRQTRKHIRNWIKPGMTMIDICEEL 483
DER+ N E RAL+ LH +E++ A + K + + + + D+ + L
Sbjct: 790 DERS--NHMQKEAALRALENLHSQSQEEVKQMARDVEHSNKKLSDLENNNLKLHDLSQGL 847
Query: 484 EKTARRL 504
+KT L
Sbjct: 848 KKTVAEL 854
>10_01_0041 + 505155-506339
Length = 394
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 220 PTYYTSSGTISCGNFPEGQIMDHGPAEGI 306
P + T+SCG F G HG A+G+
Sbjct: 87 PLLWVQVTTLSCGGFVVGVTWSHGLADGV 115
>07_03_0151 -
14465479-14465675,14466280-14466401,14466934-14467081,
14467146-14467167,14467299-14467393,14467395-14467438,
14467750-14467841,14467911-14467982,14468188-14468229,
14468333-14468494,14468631-14468683,14468808-14468925,
14468974-14469150,14469573-14469639,14470195-14470273,
14473805-14473862,14474257-14474346,14474429-14474540,
14474649-14474912,14475361-14475463,14476200-14476278,
14476748-14476852
Length = 766
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 552 SRNHCAAHYTPNTGDTTVLEYDDVVKIDFGTHING 656
S N C H P D+ VL+ D++ ID ++NG
Sbjct: 473 SVNECICHGIP---DSRVLQNGDIINIDVTVYLNG 504
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,081,002
Number of Sequences: 37544
Number of extensions: 340435
Number of successful extensions: 875
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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