Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00693
         (781 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    24   1.2  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   1.2  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    24   1.2  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       24   1.6  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.7  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    23   2.7  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   8.4  

>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 747 TRARHLYHHIATHTGRLPF 691
           TR  HL  H+  HTG  P+
Sbjct: 20  TRDHHLKTHMRLHTGERPY 38


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 744 RARHLYHHIATHTGRLPFV 688
           +  HL  H+  HTG  PFV
Sbjct: 328 KTSHLKAHLRWHTGERPFV 346


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 747 TRARHLYHHIATHTGRLPF 691
           TR  HL  H+  HTG  P+
Sbjct: 173 TRDHHLKTHMRLHTGERPY 191


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 176 DRLSRVLDNDGAQDEGHG*RGRNPRGLRVFDKDGNGFI 289
           + +S+ +D++  Q  G+   GRN R  RV ++  +GFI
Sbjct: 181 EEVSKKIDDN--QKVGYVVEGRNYRKYRVEERTSDGFI 216


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -2

Query: 735 HLYHHIATHTGRLPFVPLQLNFSYIVK--LTEYFKS 634
           HL +H+  H G  PF   + +++ + K  L  + KS
Sbjct: 245 HLEYHLRNHAGSKPFQCNKCDYTCVNKSMLNSHMKS 280


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -2

Query: 735 HLYHHIATHTGRLPFVPLQLNFSYIVK--LTEYFKS 634
           HL +H+  H G  PF   + +++ + K  L  + KS
Sbjct: 3   HLEYHLRNHAGSKPFQCNKCDYTCVNKSMLNSHMKS 38


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
 Frame = -2

Query: 276 PSLSKTRRPR-GFLPRYPCPSSCAPSLSRTRESLSCRFRP 160
           P +  +  P+ G  P Y      +PS   T  S +  FRP
Sbjct: 174 PQVQWSATPQAGSTPTYQTQGLLSPSYGGTTYSFTADFRP 213


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,488
Number of Sequences: 336
Number of extensions: 2717
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)