Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00693
         (781 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1 pro...    46   1e-06
AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical prote...    25   2.6  
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    24   4.6  
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    23   8.0  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   8.0  

>AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1
           protein protein.
          Length = 160

 Score = 46.0 bits (104), Expect = 1e-06
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
 Frame = +2

Query: 254 LRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA--DIDGDGQVNYEEFVTMM 424
           L+++DK+ +G +  AEL H +T LGE+L D E+D ++++     D DG + Y  F+  M
Sbjct: 91  LKLYDKNEDGTMLLAELTHSLTALGERLDDVELDNVMKDCMDPEDDDGNIPYAPFLKKM 149



 Score = 41.1 bits (92), Expect = 4e-05
 Identities = 22/73 (30%), Positives = 38/73 (52%)
 Frame = +3

Query: 12  QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPE 191
           +I + +  FS++D +G G +   +LG  +R+L  NPT  EL   +      G   I F E
Sbjct: 9   EIEKAQFVFSVYDWEGSGQMDAMDLGNALRALNLNPT-IELIGKMGGTQKRGEKKIKFEE 67

Query: 192 FLTMMARKMKDTD 230
           FL + ++  K+ +
Sbjct: 68  FLPIFSQVKKEKE 80



 Score = 39.1 bits (87), Expect = 2e-04
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +3

Query: 21  EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEV--DADGNGTIDFPEF 194
           +F E   L+DK+ DGT+   EL   + +LG+   + EL +++ +     D +G I +  F
Sbjct: 86  DFLECLKLYDKNEDGTMLLAELTHSLTALGERLDDVELDNVMKDCMDPEDDDGNIPYAPF 145

Query: 195 LTMMARKM 218
           L  M   M
Sbjct: 146 LKKMMDNM 153


>AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical protein
           protein.
          Length = 297

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
 Frame = +2

Query: 116 PHRSRTSRHDQ*SRR---GRKRHDRLSRVLDNDGAQDEG 223
           P      RH   S R   G   H R  R+ D+DG   EG
Sbjct: 112 PEEKLRGRHSSESDREGMGHDSHKRTHRLSDSDGGSTEG 150


>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-containing
            phosphoprotein protein.
          Length = 1200

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +2

Query: 83   AGHRDEVARTEPHRSRTSRHDQ*SRRGRKRHDRLSRVLDNDGAQDEGHG*RGRNPRG 253
            +G   E  R    + R S+    SR+ RK   R     D+D  ++EG G R R  +G
Sbjct: 931  SGAPKERKRKGEKKPRKSQGGGGSRK-RKEKARRGSGGDSDSEEEEGEGSRKRKKKG 986


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 732 LYHHIATHTGRLPF 691
           L  HI THTG  PF
Sbjct: 227 LKRHIRTHTGEKPF 240


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 266  DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQ 394
            D++GN      E     T +G +++  +VD  +RE +    GQ
Sbjct: 1061 DQEGNDMEREVETSDEFTGIGIRVSFTQVDAEMREMNQLSGGQ 1103


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 660,507
Number of Sequences: 2352
Number of extensions: 12479
Number of successful extensions: 31
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81497388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)