Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00693
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.34 
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    24   1.4  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   2.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   3.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   5.6  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.7  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   9.7  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 36  FSLFDKDGDGTITTKELGTVMRS--LGQNPTEAELQDMINEVDADGNGTIDFPEF 194
           FS +D++ +G +  +EL     +  L +      L  MI+  D DG+G ++  EF
Sbjct: 242 FSHYDRNNNGNLEREELEQFAENEDLEELCRGCNLGHMISYDDTDGDGKLNVNEF 296


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 747 TRARHLYHHIATHTGRLPF 691
           TR  HL  H+  HTG  P+
Sbjct: 20  TRDHHLKTHMRLHTGEKPY 38


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -2

Query: 735 HLYHHIATHTGRLPFVPLQLNFSYIVK--LTEYFKS 634
           HL +H+  H G  PF   + ++S + K  L  + KS
Sbjct: 3   HLEYHLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKS 38


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 743 EPDTYTITLRRTPDVFPLYRYS 678
           EP+    T   TP  FP Y YS
Sbjct: 320 EPNDEVATYDNTPRDFPYYMYS 341



 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 723 HIATHTGRLPFV 688
           H+ THTG  P+V
Sbjct: 194 HMRTHTGEKPYV 205


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/28 (28%), Positives = 12/28 (42%)
 Frame = +1

Query: 415 HHDDVEVSRRLVCV*KAENLNIHFVS*H 498
           H    E     VC+   E + +HF + H
Sbjct: 183 HQSGSEAEAEFVCIATPEAIELHFTTDH 210


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/47 (19%), Positives = 22/47 (46%)
 Frame = +2

Query: 86  GHRDEVARTEPHRSRTSRHDQ*SRRGRKRHDRLSRVLDNDGAQDEGH 226
           G+R    +   ++   +R +   R G +++D  +   DN+   ++ H
Sbjct: 492 GNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNNRNDNQVH 538


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 243  FLPRYPCPSSCAP 205
            F P Y  P++CAP
Sbjct: 1803 FSPEYDDPANCAP 1815


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 237 PRYPCPSSCAPSLSRTRESLSCRFRP 160
           P  P P    P++ R R  L+ RF P
Sbjct: 372 PPTPFPRFIPPNVYRFRPPLNPRFEP 397


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,095
Number of Sequences: 438
Number of extensions: 3067
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)