Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00692
         (726 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    28   0.067
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   1.9  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    23   3.3  

>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 28.3 bits (60), Expect = 0.067
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 237 Y*HQKNLYPEEDTPEEIIQRRGVVLSEL 320
           Y H  N YP E+  EE+ ++ G+ +S++
Sbjct: 250 YSHLSNPYPSEEAKEELARKCGITVSQV 277


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -2

Query: 557  TSPVDKSKDMMLTPHNSTFIAIFGQTIH 474
            TS    S    L PH S    I G TIH
Sbjct: 1405 TSTTTNSLTFKLKPHESDVEPIHGYTIH 1432


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 396 MRDPKTLINHLSTNKEYEFKIEMIDSM 476
           + DP T    L+TN+ YE  +   DS+
Sbjct: 144 LSDPNTNKLKLNTNESYELTVLKSDSL 170


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,679
Number of Sequences: 336
Number of extensions: 3471
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)