Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00692
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    76   4e-15
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    29   0.68 
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    29   0.89 
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    29   0.89 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    28   1.2  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    27   3.6  
SPAC869.06c |||cation binding protein |Schizosaccharomyces pombe...    26   4.8  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    26   4.8  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   6.3  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   6.3  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   6.3  
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce...    25   8.3  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    25   8.3  

>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 76.2 bits (179), Expect = 4e-15
 Identities = 33/55 (60%), Positives = 45/55 (81%)
 Frame = +1

Query: 82  KFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDI 246
           K+DL+ KI Q+LDRHL+FPLLEFL+ ++T+D  ELLQAK ++L  TNM DYV ++
Sbjct: 14  KYDLSQKIMQHLDRHLIFPLLEFLSLRQTHDPKELLQAKYDLLKDTNMTDYVANL 68



 Score = 30.3 bits (65), Expect = 0.29
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +1

Query: 622 NWDGALDDLTKLREFIDN 675
           +WDGA+++L KLRE +D+
Sbjct: 193 DWDGAMEELGKLREMVDS 210



 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +2

Query: 482 FGQISL*MWNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEIL 616
           F Q      NY  ++  LY  +      + N  S  WGK ASEIL
Sbjct: 147 FAQFQYNCGNYGGASDLLYHFRAFSKDPELN-ASATWGKFASEIL 190


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +3

Query: 384 TIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRLAKYRY 500
           T+ T+ D   ++ HL+     +F +   ++M++ ++YRY
Sbjct: 180 TVATLGDLIGMVGHLNDTSGVDFNLNEYNAMWKTSEYRY 218


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 97   FKIGQYLDRHLVFPLLEF-LAAKETYDQSELLQAKLEILSK 216
            F I +YL  +L+ P LEF L A E   Q  +  A  ++ SK
Sbjct: 1218 FHISKYLSSNLLLPFLEFLLTASEAEAQIPVTDASQKVSSK 1258


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = -2

Query: 506 TFIAIFGQTIHAIDHFNFKLILLVCRKMVYKSFRIPH-----GFNCFHYIISLHESQYW 345
           TF+  +G  I+  D +N    L     +VY   ++ +      F+  + ++S+++SQ W
Sbjct: 83  TFLVKYGDLINIQDPYNLNKTLFSVSDLVYNGIQLDYDSYSISFDAKYVLVSVNKSQRW 141


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +3

Query: 369  DDVMKTIETMRDPKTLINHLSTNKE---YEFKIEMIDSMYRLAKYRYECGI 512
            +DV+K + T+  PK +I  L   ++   +EF I+ ID ++ LA    E GI
Sbjct: 3764 NDVLKKLITILSPKVIITKLDFERDTFVHEFGIDSIDLIW-LASKVSEAGI 3813


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +3

Query: 378 MKTIETMRDPK---TLINHLSTNKEYEFKIEMIDSMYRLAKYRYECGIMWSQHHIFTFVN 548
           +K + T RDP    T +N+L ++ +      +  S    ++Y Y   + W+  H   FV 
Sbjct: 63  VKDLATPRDPTSYFTFLNYLHSHGQERLSGFLNMSTLEPSRYEYHDYLCWAASHFSKFVE 122

Query: 549 W 551
           +
Sbjct: 123 Y 123


>SPAC869.06c |||cation binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -2

Query: 626 QFVPKFR*PIYP-KEPTNNSCQLATSPVDKSKDMM 525
           +FVP    P  P K P      L  +P+DK +DMM
Sbjct: 165 KFVPTHSHPSAPNKPPFETVAGLFAAPIDKLRDMM 199


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/61 (22%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = -2

Query: 518 PHNSTFIA-IFGQTIHAIDHFNFKLILLVCRKMVYKSFRIPHGFNCFHYIISLHESQYWL 342
           P N  F + I+   ++AI+H    ++L    + +++ ++ PH F    ++ S+H++   L
Sbjct: 476 PSNGPFSSFIYHVKLNAIEH----ILLSSFEQKLHQPYQWPHFFAVLDHVFSIHQTHLEL 531

Query: 341 Y 339
           +
Sbjct: 532 H 532



 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 255 DSSDVSNIIYHVSFAQN 205
           D  D+S+  YH+SF QN
Sbjct: 184 DEEDISSFSYHMSFLQN 200


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 503 FIAIFGQTIHAIDHFNFKLILLVCRKMVYKSFRIP 399
           F  IFGQ I AID ++ KL  +  +    +SF  P
Sbjct: 351 FFGIFGQKIDAIDFYSAKLYKISQQIENARSFDYP 385


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 9/133 (6%)
 Frame = -2

Query: 566 QLATSPVDKSKDMMLTPHNSTFIAIFGQTIHAIDHFNFKLILLVCRKMVYKSFRIPHGFN 387
           Q ATS +   K + L   NS  I IFG     +  F  + +      +  K  R      
Sbjct: 134 QYATSQITLGKMISLINFNSLLITIFG-LASCVFSFGVRFLWQYLSAIAGKRAR----SL 188

Query: 386 CFHYI-------ISLHESQYWLY-CILKFLQF-RKNYTSPLYNFFRSVFFRIEILLMSVT 234
           CFH +        SL ES+  L   + + +QF  K+ + P+++   ++   +  L++S  
Sbjct: 189 CFHVLSSKSSTFYSLTESKSGLVNSVDRCIQFYEKSISLPMFHIAENLAISLSCLIISFR 248

Query: 233 *SIMLVLLKISNF 195
            S  L L+ ++++
Sbjct: 249 YSWSLTLVVLASY 261


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +3

Query: 342  EPVLRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIE 461
            +PV+R+       + I + + P+ L  H S  K+Y++ ++
Sbjct: 1947 KPVIRISHFHHTFEVISSKQRPRRLTIHGSDGKDYQYVLK 1986


>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 637 ARHPNLYQNFASQFTPKNRQIILVSW 560
           A HP L+ +     TP  RQ+++  W
Sbjct: 64  AEHPELFISLPRGETPLERQLLVTKW 89


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = -3

Query: 658 EVWLDHRARHPNLYQNFASQFTPKNRQIILVSWRHHQLTKVKI*C*LHIIPHS*RYLAKR 479
           EV +  R RH N+ +        K+   ++  +  H LT V +   LH  P + ++L+K+
Sbjct: 324 EVKILQRLRHKNIVR-LLEIMVEKSSVYMVFEYMDHDLTGVLLNSQLHFTPGNIKHLSKQ 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,895,898
Number of Sequences: 5004
Number of extensions: 57856
Number of successful extensions: 173
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)