Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00692
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0836 - 6795224-6795263,6796027-6796128,6796264-6796401,679... 65 6e-11
07_01_0482 + 3627980-3628270,3628785-3629012,3629116-3629237,362... 63 2e-10
07_03_0517 + 19000050-19000427,19000539-19000766,19001142-190012... 53 3e-07
03_02_0320 + 7437528-7437623,7437725-7437772,7438885-7438994,743... 29 2.8
01_01_0447 - 3327727-3328144,3328438-3328688,3328820-3328909,332... 29 2.8
02_05_0961 - 33103024-33103555,33107323-33107432,33107577-331077... 29 3.8
02_04_0349 + 22222091-22222639,22222718-22223695 28 8.7
02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678 28 8.7
>07_01_0836 -
6795224-6795263,6796027-6796128,6796264-6796401,
6796790-6796932,6797388-6797607,6798087-6798208,
6798317-6798544,6798993-6799355
Length = 451
Score = 64.9 bits (151), Expect = 6e-11
Identities = 29/58 (50%), Positives = 40/58 (68%)
Frame = +1
Query: 79 SKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRR 252
++ DLT ++ +D HLVFPLLEFL + Y E+L+AKL +LS TNM+DY DI +
Sbjct: 2 AEHDLTARMAGQMDCHLVFPLLEFLQERALYANKEILEAKLRLLSGTNMVDYAMDIHK 59
Score = 52.4 bits (120), Expect = 4e-07
Identities = 22/87 (25%), Positives = 54/87 (62%)
Frame = +3
Query: 249 KNLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPKTLINHL 428
K+L+ ++ P+++++RR V+S L+ L +A P++ +Q + ++ +R K H+
Sbjct: 59 KSLHDTDEVPDDMVRRRTDVVSRLRALDEATAPIVSFLQNQQL---VQELRPDKQYNLHM 115
Query: 429 STNKEYEFKIEMIDSMYRLAKYRYECG 509
++ ++ E I+++Y+ AK++++CG
Sbjct: 116 LQDR-FQIGPEQIETLYQFAKFQFDCG 141
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/38 (47%), Positives = 29/38 (76%)
Frame = +2
Query: 509 NYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEILVQ 622
NY ++A YLY + + + ++++ LS LWGKLA+EIL+Q
Sbjct: 142 NYSDAAVYLYQYRALCTNSERS-LSALWGKLAAEILMQ 178
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +1
Query: 622 NWDGALDDLTKLREFIDN 675
NWD ALD+L +L+E ID+
Sbjct: 179 NWDVALDELNRLKEIIDS 196
>07_01_0482 +
3627980-3628270,3628785-3629012,3629116-3629237,
3629747-3629966,3630434-3630576,3631004-3631141,
3631275-3631380
Length = 415
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/58 (46%), Positives = 40/58 (68%)
Frame = +1
Query: 79 SKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRR 252
++ DLT ++ +LD HLV PLLEFL + Y + E+L+AK+ +L TNM+DY DI +
Sbjct: 2 AEHDLTARMAGHLDCHLVLPLLEFLQERHLYPEEEILEAKIRLLRGTNMVDYAMDIHK 59
Score = 34.3 bits (75), Expect = 0.100
Identities = 17/38 (44%), Positives = 27/38 (71%)
Frame = +2
Query: 509 NYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEILVQ 622
NY +A YL+ + + + +++ LS LWGKLA+EIL+Q
Sbjct: 118 NYSFAAQYLHQYRALCTNIERS-LSALWGKLAAEILMQ 154
>07_03_0517 +
19000050-19000427,19000539-19000766,19001142-19001221,
19001222-19001441,19001571-19001713,19002023-19002160,
19002295-19002376
Length = 422
Score = 52.8 bits (121), Expect = 3e-07
Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Frame = +1
Query: 79 SKFDLTFKIGQYLDRHLVFPLLEFLAAK--ETYDQSELLQAKLEILSK-TNMIDYVTDIR 249
++ DLT ++ +++ HLVFPLLEFL + Y E+LQAKL +L + TNM+DY D
Sbjct: 2 AEHDLTARMAAHMNCHLVFPLLEFLQWRPGRVYAVEEILQAKLRLLIQGTNMVDYAMDTH 61
Query: 250 RI 255
++
Sbjct: 62 KL 63
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/78 (19%), Positives = 40/78 (51%)
Frame = +3
Query: 276 PEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFK 455
P+++++RR V++ L L P++ ++ + P N ++ ++
Sbjct: 77 PDDMVERRHEVVTRLGALAAPAAPIVSALKNHHL--------GPDKEHNIRMLHERFQIG 128
Query: 456 IEMIDSMYRLAKYRYECG 509
+ I+++Y+ AK++++CG
Sbjct: 129 PDQIEALYQYAKFQFDCG 146
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +2
Query: 509 NYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEIL 616
NY ++A L+ + + + ++++ LS WGKL++EIL
Sbjct: 147 NYPDAAENLHRYRALCTSSERS-LSAQWGKLSAEIL 181
>03_02_0320 +
7437528-7437623,7437725-7437772,7438885-7438994,
7439651-7439735,7439839-7440115,7440296-7440454,
7440563-7440666,7440930-7441168,7441265-7441583,
7441665-7442069,7442157-7442294,7442376-7442555
Length = 719
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Frame = -1
Query: 402 PSWFQL----FSLHHLFA*VSILALLHLEVPAVPKELHLSAV*FLQECLLQDRDS 250
PS F+L FSL L A VS ++L H E +P+++H + L+ C+ +D +S
Sbjct: 367 PSVFRLRYGWFSLAELEAGVSEISLTHFENCLIPEDIHAKSP--LEACVQKDGNS 419
>01_01_0447 -
3327727-3328144,3328438-3328688,3328820-3328909,
3329061-3329159,3329240-3329353,3329450-3329555,
3329661-3329740,3329913-3330173,3330271-3330507,
3330635-3330922
Length = 647
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 255 LYPEEDTPEEIIQRRGVVLSELQELQDAVEPV 350
L P+EDT E ++RRGV L+E + +AV+ V
Sbjct: 392 LLPKEDTYVEFLKRRGVPLTERECSTNAVDIV 423
>02_05_0961 -
33103024-33103555,33107323-33107432,33107577-33107707,
33107779-33107870,33108210-33108337,33108658-33108723,
33108815-33108907,33108979-33109128,33109553-33109578,
33109674-33109826,33110140-33110228,33110335-33110418,
33110564-33110598,33110702-33110842,33111045-33111128,
33111208-33111215,33111590-33111746
Length = 692
Score = 29.1 bits (62), Expect = 3.8
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = -1
Query: 402 PSWFQLFSLHHLFA*VSILALLHLEVPAVPKELHLSAV*FLQECLLQDRDSSDVSNIIYH 223
PS+ +L SL + F + ILAL VP V K++ +S++ +L R S + NI Y
Sbjct: 143 PSYRKLSSLRNQFPDIPILALTATAVPKVQKDV-ISSLCLRNPLIL--RASFNRPNIFYE 199
Query: 222 VSF 214
V +
Sbjct: 200 VRY 202
>02_04_0349 + 22222091-22222639,22222718-22223695
Length = 508
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 652 WLDHRARHPNLYQNFASQFTPKNRQIILVSW 560
WLD RA +Y N+ S N+Q++ +W
Sbjct: 303 WLDGRAPRSVVYVNYGSIAVMSNQQLVEFAW 333
>02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678
Length = 258
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +3
Query: 375 VMKTIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRLAKYR 497
V+ +ET P TL+ L+TNK+Y K SMYR +R
Sbjct: 127 VIDNLETSPVPDTLLWGLATNKKYTTK-----SMYRTLTFR 162
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,007,839
Number of Sequences: 37544
Number of extensions: 339638
Number of successful extensions: 801
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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