Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00692
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8134| Best HMM Match : TPR_3 (HMM E-Value=1.3)                      48   1e-05
SB_42056| Best HMM Match : TPR_3 (HMM E-Value=1.3)                     45   5e-05
SB_4521| Best HMM Match : TPR_2 (HMM E-Value=1.7e-13)                  31   1.3  
SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)                   30   1.7  
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)                  29   3.8  
SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_8134| Best HMM Match : TPR_3 (HMM E-Value=1.3)
          Length = 399

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 28/87 (32%), Positives = 45/87 (51%)
 Frame = +3

Query: 249 KNLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPKTLINHL 428
           K LYP+E+ P  ++++R  V+ EL++LQ   EP+            I    DP+      
Sbjct: 14  KGLYPDEEVPTSLVEKRVEVVKELKDLQAQTEPI------------INCFSDPEFTA--- 58

Query: 429 STNKEYEFKIEMIDSMYRLAKYRYECG 509
                 + K EM+D +Y+ AK++YECG
Sbjct: 59  ------QIKPEMLDVLYKFAKFQYECG 79



 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 21/38 (55%), Positives = 26/38 (68%)
 Frame = +2

Query: 509 NYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEILVQ 622
           NY  +A YLYF + +    D N L+ LWGKLASEIL+Q
Sbjct: 80  NYSGAAEYLYFYRALAPGGDTNSLNALWGKLASEILMQ 117


>SB_42056| Best HMM Match : TPR_3 (HMM E-Value=1.3)
          Length = 215

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 21/38 (55%), Positives = 26/38 (68%)
 Frame = +2

Query: 509 NYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEILVQ 622
           NY  +A YLYF + +    D N L+ LWGKLASEIL+Q
Sbjct: 17  NYSGAAEYLYFYRALAPGGDTNSLNALWGKLASEILMQ 54



 Score = 29.1 bits (62), Expect = 3.8
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +3

Query: 462 MIDSMYRLAKYRYECG 509
           M+D +Y+ AK++YECG
Sbjct: 1   MLDVLYKFAKFQYECG 16


>SB_4521| Best HMM Match : TPR_2 (HMM E-Value=1.7e-13)
          Length = 829

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +3

Query: 339 VEPVLRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRLAKYR 497
           +E  ++L +   V +T  T    + L N L   KEY+  +E+    YRL K R
Sbjct: 708 MEKAIKLQKELGVGETEHTATFQRNLANVLLALKEYDLALEVAQESYRLRKER 760


>SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)
          Length = 801

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +3

Query: 249 KNLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLR-LMQRDDVMKTIETMRDPKTLINH 425
           + LYPE +     + +  V    + ELQ A+    R L+++   + TI  + D KTL+ H
Sbjct: 511 RELYPETEPAGLFVAKVDVSEVPMAELQAALPAFERQLLRKGYGLYTISGVLDRKTLVEH 570

Query: 426 LSTNKEYEFKIEMIDSM 476
           L  ++ +  + ++  +M
Sbjct: 571 LCASEGFREQGDLAAAM 587


>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2520

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/70 (27%), Positives = 42/70 (60%), Gaps = 6/70 (8%)
 Frame = +3

Query: 291  QRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPK-TLINHLST-----NKEYEF 452
            +R   +L +++EL   V+ + + +++  ++K ++ + D K TLI   +T     NKE+E 
Sbjct: 1855 EREKELLQQVEELSTQVKTLEQRIEQLVIVK-MDALHDQKATLIEEHNTAIEKLNKEHEA 1913

Query: 453  KIEMIDSMYR 482
            K+E ++ +Y+
Sbjct: 1914 KLESVERLYK 1923


>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
          Length = 2072

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
 Frame = +3

Query: 264  EEDTPEEIIQRRGVVLSE--LQELQDAVEPVLRL------MQRDDVMKTIETMRDPKTLI 419
            EED  E+ I    +      LQEL++ VE + R         RDD+ K  ET+   K ++
Sbjct: 1215 EEDEEEDAIYEETIEKQNKRLQELKEEVENLKRKNGIEEKRLRDDINKLSETLEKEKRMV 1274

Query: 420  NHL---STNKEYEFK 455
            N L   +T ++ +F+
Sbjct: 1275 NQLKNEATEQKNDFR 1289


>SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 255 LYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKT 386
           +YP  DT  EII +  V +  ++E  + +  VL  ++R+ + KT
Sbjct: 223 VYPTGDTETEIILKGVVRVENVKEAAEHIPTVLERVKREYLAKT 266


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,079,996
Number of Sequences: 59808
Number of extensions: 408007
Number of successful extensions: 1078
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)