Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00692
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57290.1 68416.m06377 eukaryotic translation initiation facto...    66   3e-11
At3g20270.1 68416.m02567 lipid-binding serum glycoprotein family...    32   0.45 
At1g67410.1 68414.m07672 exostosin family protein contains Pfam ...    29   2.4  
At5g55200.1 68418.m06881 co-chaperone grpE protein, putative sim...    28   7.2  
At3g26270.1 68416.m03278 cytochrome P450 71B25, putative (CYP71B...    28   7.2  

>At3g57290.1 68416.m06377 eukaryotic translation initiation factor
           3E / eIF3e (TIF3E1) identical to eukaryotic initiation
           factor 3E subunit [Arabidopsis thaliana]
           gi|12407658|gb|AAG53613
          Length = 441

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 27/60 (45%), Positives = 42/60 (70%)
 Frame = +1

Query: 73  SYSKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRR 252
           S   +DLT  I   LDRHLVFP+ EFL  ++ Y   ++L++K+++L++TNM+DY  DI +
Sbjct: 4   SKQNYDLTPLIAPNLDRHLVFPIFEFLQERQLYPDEQILKSKIQLLNQTNMVDYAMDIHK 63



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 25/87 (28%), Positives = 52/87 (59%)
 Frame = +3

Query: 249 KNLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPKTLINHL 428
           K+LY  ED P+E+++RR  V++ L+ L++A  P++  +   +    ++ +R  K   N  
Sbjct: 63  KSLYHTEDAPQEMVERRTEVVARLKSLEEAAAPLVSFLLNPN---AVQELRADKQ-YNLQ 118

Query: 429 STNKEYEFKIEMIDSMYRLAKYRYECG 509
              + Y+   + I+++Y+ AK+++ECG
Sbjct: 119 MLKERYQIGPDQIEALYQYAKFQFECG 145



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 20/38 (52%), Positives = 27/38 (71%)
 Frame = +2

Query: 509 NYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEILVQ 622
           NY  +A YLY  + + S  +++ LS LWGKLASEIL+Q
Sbjct: 146 NYSGAADYLYQYRTLCSNLERS-LSALWGKLASEILMQ 182


>At3g20270.1 68416.m02567 lipid-binding serum glycoprotein family
           protein similar to SP|P17213 Bactericidal
           permeability-increasing protein precursor (BPI) {Homo
           sapiens}; contains Pfam profile PF02886: LBP / BPI /
           CETP family, C-terminal domain
          Length = 722

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 16/60 (26%), Positives = 36/60 (60%)
 Frame = -2

Query: 341 YCILKFLQFRKNYTSPLYNFFRSVFFRIEILLMSVT*SIMLVLLKISNFACRSSDWSYVS 162
           YC L  +   K  T P +++  ++FF +E+ LM V  +I+++ + +S+   +S++  ++S
Sbjct: 217 YCDLIGIAKNKFQTIPYFSYPSTLFFFLEMALMKVM-TILVLFVSVSSTLAQSNNGGHIS 275


>At1g67410.1 68414.m07672 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 430

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 658 EVWLDHRARHPNLYQNFASQFTPKNRQIILVSWRH--HQLTKVKI 530
           E WL+   R  N+  +F  Q+ PK    + + WR   H++  VK+
Sbjct: 371 EKWLEMWKRLKNVSHHFEFQYPPKREDAVNMLWRQVKHKIPYVKL 415


>At5g55200.1 68418.m06881 co-chaperone grpE protein, putative
           similar to chaperone GrpE type 2 [Nicotiana tabacum]
           GI:3851640; contains Pfam profile PF01025: co-chaperone
           GrpE
          Length = 302

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 649 LDHRARHPNLYQNFASQFTPKNRQIILVSWRHHQL 545
           L   +R   L  +F+S  TPK  QI +V+ R H L
Sbjct: 7   LSRVSRSAGLRSSFSSVVTPKRNQIPIVASRFHSL 41


>At3g26270.1 68416.m03278 cytochrome P450 71B25, putative (CYP71B25)
           identical to Cytochrome P450 71B25 (SP:Q9LTL2)
           [Arabidopsis thaliana]; contains Pfam profile: PF00067
           cytochrome P450
          Length = 501

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 563 LATSPVDKSKDMMLTPHNSTFIAIFGQTIHAIDHFN 456
           L  SPVD SK +     ++ F  +FGQ+     HF+
Sbjct: 164 LKQSPVDLSKTLFCLAASTVFRPVFGQSFSDNKHFS 199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,841,230
Number of Sequences: 28952
Number of extensions: 289933
Number of successful extensions: 815
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)