Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00691
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    30   0.34 
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    28   1.4  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    27   1.8  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    26   4.2  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    26   5.5  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   9.7  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   9.7  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    25   9.7  

>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +2

Query: 221 RSYNV-NEQFALAVRATTRESKYPTGSPSCPWTTATLPVTSETAASKLLPSAR--GRSLS 391
           R+YN  N   A + R + +E   PT +   P  T +LPV S  A   +   A   G + S
Sbjct: 397 RAYNPPNRNQAFSARDSRQEKTQPTNASPAPLVTPSLPVPSIPAVPGMEAMAMPPGVTSS 456

Query: 392 VALQTSPGL 418
           +A+ T+  +
Sbjct: 457 IAVPTTSSM 465


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
 Frame = -1

Query: 461 VRISVGNDRSSDALTILATSAAQRLVIGPVLMVTVLTLPSLM*LEVSLSSTDTTGILLGI 282
           V + +  D + + LT +A    +  + G ++  T +  P  +    S S  + TG L G 
Sbjct: 303 VLVKIAPDLNEEELTDIADVLKKCKIDGVIVGNTTVQRPKTL---KSTSHVEETGGLSG- 358

Query: 281 CFPSLWPLL--RAQTVRSHCSSEGSLLSCQG 195
             P L P+     +T+R H SS+  ++ C G
Sbjct: 359 --PPLKPIALNTLRTLRKHLSSDIPIIGCGG 387


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +1

Query: 343 DGSVKTVTISTGPITKRCAADVARIVNASEDRSLPTDILTILTTSKISSVTWQKRLYYG 519
           D S+K VT S         AD    +  S      + +  IL++SK+ S  W +  +YG
Sbjct: 135 DSSIKDVTKSHPATNANFTADFESSIEESYSTENKSPV--ILSSSKVPSSQWSRLWHYG 191


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 296 SPSCPWTTATLPVT-SETAASKLLPSARGRSLSVALQTSPGLSTRPKI 436
           SPS P+ T  LPVT +    +   P+A+ + ++      P +S  P +
Sbjct: 261 SPSLPFKTPLLPVTKTPLEEANSSPAAQNQHITTVDHVHPQVSMTPSL 308


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 148 LSIGIFTRWYIPK*GIGEYAYNR 80
           LSI  F +WY+    I E+ Y R
Sbjct: 13  LSISFFLQWYLANTWIAEFLYRR 35


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -1

Query: 185 FLLPSNRLVYQPSVDRDLH 129
           +LL  +RLV+QP+ +R+ H
Sbjct: 257 YLLERSRLVFQPNQERNYH 275


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1254

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 409  ARIVNASEDRSLPTDILTILTTSK 480
            A  +NAS+D +L +D L +L  SK
Sbjct: 1213 ASFINASDDIALMSDFLQVLRISK 1236


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 25/84 (29%), Positives = 31/84 (36%)
 Frame = +2

Query: 275 ESKYPTGSPSCPWTTATLPVTSETAASKLLPSARGRSLSVALQTSPGLSTRPKIGRCLRI 454
           E+KYPT SP+   +  + P    T A+    SA   SL        G     + GR L  
Sbjct: 251 EAKYPTVSPTNEPSAHSRPSPQGTTANS--SSASISSLHNTTPDGEGKYRSVQNGRALNY 308

Query: 455 F*QF*RHPKSRA*LGKNGYTMEPG 526
              F     S        YT EPG
Sbjct: 309 VSSFNSDSHSPKDYISQSYTNEPG 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,645
Number of Sequences: 5004
Number of extensions: 50707
Number of successful extensions: 150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)