Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00691
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314     30   1.9  
03_05_0357 - 23424234-23424567,23424796-23424923,23425024-234252...    30   1.9  
10_05_0054 - 8611989-8612309,8612350-8612566,8613047-8613284,861...    29   2.5  
06_03_0105 + 16693771-16693780,16693833-16693876,16694274-166943...    29   3.3  
06_01_0400 + 2862684-2862872,2862956-2863170,2863298-2863448,286...    29   4.3  
03_02_0932 + 12495700-12495738,12495859-12496093,12496178-124964...    28   5.7  
08_01_0409 + 3625071-3625228,3625829-3625905,3626310-3626889,362...    28   7.6  
05_04_0364 + 20658219-20658416,20658475-20658543                       28   7.6  
03_06_0759 - 36059872-36059928,36059934-36060125,36060241-360603...    28   7.6  

>10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314
          Length = 368

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 3/128 (2%)
 Frame = +2

Query: 65  RHK*GPVVCVLPNTLLRYVPPREDPDRQRAGTQVDYWGEGKVTNLDKIRGFPRSYNVNEQ 244
           +HK  P + +L        PP++D   +  GT++  + +GK   LD    F    + ++ 
Sbjct: 155 KHKASPAMSLLQGYYGLTPPPKKDTTHE--GTEMAVYRKGKSVFLDDDPWFGEPPD-SDP 211

Query: 245 FALAVRATTR---ESKYPTGSPSCPWTTATLPVTSETAASKLLPSARGRSLSVALQTSPG 415
           F    R T      S    G       +  L    + A  +LLP     S +V  +   G
Sbjct: 212 FPFQHRKTRSLAIGSSLLNGETEENGDSEKLIRRRQKADGELLPREENGSSAVLARAGKG 271

Query: 416 LSTRPKIG 439
           L+ RPK G
Sbjct: 272 LALRPKSG 279


>03_05_0357 -
           23424234-23424567,23424796-23424923,23425024-23425205,
           23425255-23425504
          Length = 297

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
 Frame = +2

Query: 194 NLDKIRGFPRS--YNVNEQFALAVRATTRESKYPTGSP----SCPWTTATLPVTSETAAS 355
           N D IRG P +  Y   +Q A  +R TT+E      S     S PW  + LP+   T A+
Sbjct: 187 NCDPIRGDPNAKVYARKQQGASDLRITTQEEAPNLQSTRPCRSLPWLFSLLPLRPVTWAA 246

Query: 356 KLLP 367
           K+ P
Sbjct: 247 KVHP 250


>10_05_0054 -
           8611989-8612309,8612350-8612566,8613047-8613284,
           8613633-8613843,8613924-8614048,8615849-8615968,
           8617245-8618076
          Length = 687

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 426 RVDNPGDVCSATLSDRPRADGNSFDAAVSDVTGSVA 319
           R DN   +  +  +DR  AD   FDA V+D+ G++A
Sbjct: 139 RPDNTEVLIGSPSADRITADAGHFDALVADLAGALA 174


>06_03_0105 +
           16693771-16693780,16693833-16693876,16694274-16694348,
           16694548-16694784,16694880-16695050,16695137-16695250
          Length = 216

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 334 NWKCRCRPRTRRGSCWVF 281
           N+ CRCRP  RR   W +
Sbjct: 5   NYVCRCRPENRRNKGWAY 22


>06_01_0400 +
           2862684-2862872,2862956-2863170,2863298-2863448,
           2863566-2863757,2864471-2864633,2864754-2864989,
           2865446-2865622,2865707-2865826,2865939-2866241
          Length = 581

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +1

Query: 340 RDGSVKTVTISTGPITKRCAADVARIVNASEDRSLPTDILTILTTSKISSVTWQK 504
           R G  KTV    GP T  CAA++   +     RSL  D +  L   K+ +V  +K
Sbjct: 260 RRGVQKTVLERKGPSTFTCAAEIVSKIELRVHRSL-EDTVDALLAGKMPNVEIRK 313


>03_02_0932 +
           12495700-12495738,12495859-12496093,12496178-12496423,
           12496519-12496572,12497329-12497589,12497750-12497802,
           12497893-12498016,12498147-12498401,12498798-12499888,
           12500001-12500007,12500316-12500445,12500617-12500731,
           12500783-12500853,12501246-12501354,12501550-12501738,
           12502519-12502644,12503048-12503563
          Length = 1206

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 438 VVAYGYSDNSDDIQNLERDLAKTAILWSRVRTTRRLEDPDG 560
           +V YGY D   D+ + E +L ++   + ++  + R  D  G
Sbjct: 595 IVRYGYRDVHQDVDSFETELVESLATFIKLDASYRCSDASG 635


>08_01_0409 +
           3625071-3625228,3625829-3625905,3626310-3626889,
           3626974-3627111,3627318-3627387,3627449-3627933,
           3628681-3628890,3629259-3629326,3629855-3629961,
           3630275-3630346,3630448-3630614,3630709-3630820,
           3631464-3631650,3632174-3632286
          Length = 847

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 260 RATTRESKYPTGSPSCPWTTATLP 331
           +A  R +KYP   P  PW  +T+P
Sbjct: 411 QAPCRSTKYPREIPQLPWYRSTIP 434


>05_04_0364 + 20658219-20658416,20658475-20658543
          Length = 88

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 308 PWTTATLPVTSETAASKLLPSARGRSLSVALQTSPGLSTRP 430
           P +T  LPV      +++  SAR   L   L   PG S RP
Sbjct: 10  PDSTCRLPVMKSRHPTRIAQSARPTQLPETLTLQPGRSGRP 50


>03_06_0759 -
           36059872-36059928,36059934-36060125,36060241-36060348,
           36060440-36060712,36060923-36061009,36061085-36061276,
           36061841-36061969,36062087-36062200,36062446-36062490,
           36062785-36062956,36063229-36063515,36063989-36064456
          Length = 707

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/57 (28%), Positives = 32/57 (56%)
 Frame = +1

Query: 481 ISSVTWQKRLYYGAGYELPADLKTQTAFSTKMVFADATSINNHLYDLVTGGDYINAV 651
           I S+T ++ LYY A  +LP    ++T+     +   A S+ ++  +L+ G  +IN++
Sbjct: 166 IDSLTVREMLYYSAHLQLPGLFSSKTSIVEDAI--AAMSLADYADNLIGGHCFINSL 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,415,743
Number of Sequences: 37544
Number of extensions: 368817
Number of successful extensions: 1074
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)