Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00691
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10306| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.067
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.1  
SB_29033| Best HMM Match : Ion_trans_2 (HMM E-Value=8.1e-29)           30   1.5  
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_27915| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_54755| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.9  
SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)                 28   5.9  

>SB_10306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 34.7 bits (76), Expect = 0.067
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
 Frame = -2

Query: 310 RTRRGSCWVF--AFPRCGPYCER-KLFVHIVAPREASYLVKVSHFSFSPVIDLCTSPLSI 140
           RTR GSC+ F  A  R  P+      F+ IV+ RE+ + +K+ H SF   + +    +++
Sbjct: 21  RTREGSCFDFVKARGRGWPWFRHLSRFIVIVSTRESVFWLKICHLSFLSALCIDLLTVNL 80

Query: 139 GIF 131
           GI+
Sbjct: 81  GIY 83


>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2248

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 287  PTGSPSCPWTTATLPVTSETAASKLLPSAR--GRSLSVALQTSPGLSTRPKI 436
            P G P  P   +    +SET   KLLP  +  G S    L+ +P ++  P++
Sbjct: 1511 PEGKPGSPGQPSRQSASSETTNEKLLPGKQSPGASSDTELKGTPSVTNTPQL 1562


>SB_29033| Best HMM Match : Ion_trans_2 (HMM E-Value=8.1e-29)
          Length = 387

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +2

Query: 188 VTNLDKIR-GFPRSYNVN-EQFALAVRATTRESKYPTGSPSCPW 313
           V NL+ +R  F + YN++ E F L V    R +KY  G P   W
Sbjct: 42  VVNLNSLRMTFCKKYNISTEDFELLVGKVERATKYRCGGPPESW 85


>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 970

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
 Frame = +2

Query: 335 TSETAASKLLPSARGRSLSVALQTS-PGLSTRPKIGR--CLRIF*QF*RHPKSRA*LGKN 505
           T ETA S +   A  R  S A Q S P L  +          +     + P +     K 
Sbjct: 128 TRETATSSINTEATSRQPSTATQVSGPSLPMQHSTEHHSTSGVASPSTKQPSTALTTTKQ 187

Query: 506 GYTMEPGTNYPQT*RPRRHSARRWSLPTQRQSTITCTT 619
             T +  TN P T +P  +     +LP+ +Q T T  T
Sbjct: 188 PTTQQTTTNLPSTRQPTTNQQTTTTLPSTKQPTTTQQT 225


>SB_27915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = +3

Query: 480 NLERDLAKTAILWSRVRTTRRLEDPDGIQHED----GLCRRNVNQQ-SLVRLGYGR 632
           NLERDL     +W    T  R    D  QH++    GL  +N  +Q +L+ +  GR
Sbjct: 35  NLERDLIDLETIWGTQDTNERPVRRDNGQHDEMNSNGLLPKNKRKQTNLIIISQGR 90


>SB_54755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +1

Query: 334 YIRDGSVKTVTISTGPITKRCAADVARIVNASEDRSLPTDILTILTTSKISSVTWQKRLY 513
           Y R G+ K    S  P+      D+  ++  + DR+ P D L++L T + +S   + +  
Sbjct: 27  YTRVGTRKRPAHSRYPLGHAAIPDMNYLITVTLDRTRPIDFLSVLHTFRPTSQGCRLQSV 86

Query: 514 YGAGYEL 534
             A Y L
Sbjct: 87  MDAQYHL 93


>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 760

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = +2

Query: 212 GFPRSYNVNEQFALAVRATTRESKYPTGSPSCPWTT 319
           GFPRS  + ++   AV ATT ES   TGS   P  T
Sbjct: 492 GFPRSLTLGQKLLYAVPATTVES---TGSDITPLLT 524


>SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)
          Length = 1012

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +2

Query: 266  TTRESKYPTGSPSCPWTTATLPVTS--ETAASKLLPS 370
            TT+    P  SP  P T ATLP T   E    K +P+
Sbjct: 906  TTKSVTTPQTSPKTPQTPATLPTTQTPEPGTEKTMPT 942


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,943,754
Number of Sequences: 59808
Number of extensions: 415522
Number of successful extensions: 1089
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)