Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00691
(659 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40414-2|AAA81405.2| 634|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical pr... 29 2.2
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 29 2.2
U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily ass... 29 2.9
AF295927-1|AAL83724.1| 377|Caenorhabditis elegans paraoxonase-l... 29 3.9
AF003141-2|AAK21482.2| 377|Caenorhabditis elegans Mechanosensor... 29 3.9
Z32681-3|CAD88217.1| 685|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z32681-2|CAA83607.1| 687|Caenorhabditis elegans Hypothetical pr... 28 5.1
AF173373-1|AAD51973.1| 687|Caenorhabditis elegans transmembrane... 28 5.1
U41031-2|AAA82619.2| 615|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical p... 27 8.9
>U40414-2|AAA81405.2| 634|Caenorhabditis elegans Hypothetical
protein F53B3.2 protein.
Length = 634
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 266 TTRESKYPTGSPSCPWTTATLPVTSETAASKLLPSARGRSLSVALQTSPGLSTRP 430
TT +Y T SP+ P TT+T P T+ T+ + + + + T P ++ P
Sbjct: 196 TTERVRYATFSPNIPMTTSTTPTTT-TSTFPTSTTEKSTTAQPSTTTKPTTTSPP 249
>Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical
protein K01A6.2 protein.
Length = 1092
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Frame = -1
Query: 203 CQG*SLFLLPSNRL----VYQPSVDRDLHEV 123
C+G LF+ P+NR+ VY + RDLHE+
Sbjct: 546 CRGYELFIDPANRIVTENVYAAAKSRDLHEI 576
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +2
Query: 224 SYNVNEQFALAVRATTRESKYPTGSPSCPWTTATLPVTSETAASKLLPSARGRSLSVALQ 403
SY EQ +A + P+ +PS P +TLPV +++ PSA S S +
Sbjct: 1604 SYFPVEQSKSVTQAPIPPASSPS-APSIPSIPSTLPVAPSSSSVPSSPSAPSESTSTVSE 1662
Query: 404 TSPGLSTRP 430
T ++ P
Sbjct: 1663 TPAPVNVNP 1671
>U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily
assigned gene nameprotein 312 protein.
Length = 656
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 107 LLRYVPPREDPDRQRAGTQVDYWGEGKVTNLDKIRGFPRSYNVNEQFAL 253
L + P +D D + T++D G GK+ L+ +RGF + E L
Sbjct: 26 LRKVCPQLDDNDLRFIFTELDQDGSGKIEKLEFLRGFQDTVQHGESHGL 74
>AF295927-1|AAL83724.1| 377|Caenorhabditis elegans paraoxonase-like
protein MEC-6 protein.
Length = 377
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 472 TSKISSVTWQKRLYYGAGYELPADLKTQTAFSTKMVFADATSINNHLYDLV 624
T+ ++ V QKR+Y GY DLKT+T + +YDL+
Sbjct: 58 TAGMTYVESQKRVYITLGYGRAHDLKTKTGIAFYKTNRTDGRSQQEMYDLI 108
>AF003141-2|AAK21482.2| 377|Caenorhabditis elegans Mechanosensory
abnormality protein6 protein.
Length = 377
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 472 TSKISSVTWQKRLYYGAGYELPADLKTQTAFSTKMVFADATSINNHLYDLV 624
T+ ++ V QKR+Y GY DLKT+T + +YDL+
Sbjct: 58 TAGMTYVESQKRVYITLGYGRAHDLKTKTGIAFYKTNRTDGRSQQEMYDLI 108
>Z32681-3|CAD88217.1| 685|Caenorhabditis elegans Hypothetical
protein F56F3.2b protein.
Length = 685
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 332 LEVSLSSTDTTGILLGICFPSLWPLLRAQTVRS 234
+E TD I+LG+CFPS + TV S
Sbjct: 166 VESGCPQTDPLSIILGVCFPSACSVADLTTVSS 198
>Z32681-2|CAA83607.1| 687|Caenorhabditis elegans Hypothetical
protein F56F3.2a protein.
Length = 687
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 332 LEVSLSSTDTTGILLGICFPSLWPLLRAQTVRS 234
+E TD I+LG+CFPS + TV S
Sbjct: 166 VESGCPQTDPLSIILGVCFPSACSVADLTTVSS 198
>AF173373-1|AAD51973.1| 687|Caenorhabditis elegans transmembrane
protein NDG-4 protein.
Length = 687
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 332 LEVSLSSTDTTGILLGICFPSLWPLLRAQTVRS 234
+E TD I+LG+CFPS + TV S
Sbjct: 166 VESGCPQTDPLSIILGVCFPSACSVADLTTVSS 198
>U41031-2|AAA82619.2| 615|Caenorhabditis elegans Hypothetical
protein C16B8.2 protein.
Length = 615
Score = 27.9 bits (59), Expect = 6.8
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Frame = +2
Query: 200 DKI-RGFPRSYNVNEQFALAVRATTRESKYPTGSPSCPWTTATLPVTSETAASKLLPSAR 376
DK+ RG R V+E FA ++ TT + K P P TTAT P T ++ +P+A
Sbjct: 249 DKMQRGMARF--VSEDFAKQLQRTTAKVKKYDWFP--PTTTATTPTTQFYKTTREVPTAP 304
Query: 377 GRSLS----VALQTSPGLSTR 427
++ + +SP L+ R
Sbjct: 305 PLTIDHFFIIETTSSPSLTPR 325
>Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical
protein C30H6.4 protein.
Length = 476
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/69 (23%), Positives = 29/69 (42%)
Frame = +2
Query: 218 PRSYNVNEQFALAVRATTRESKYPTGSPSCPWTTATLPVTSETAASKLLPSARGRSLSVA 397
P + N+ ++ E+ PT + TT T+P T+ + S ++ + +V
Sbjct: 237 PNTLNIGAKYEWKKCGLVPETTKPTTTTPTTTTTTTIPSTTSSTTSTSTTTSVVTTTTVT 296
Query: 398 LQTSPGLST 424
T P ST
Sbjct: 297 STTEPTTST 305
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,241,675
Number of Sequences: 27780
Number of extensions: 298665
Number of successful extensions: 820
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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