Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00691
         (659 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26160.1 68418.m03111 expressed protein                             31   0.68 
At3g15690.2 68416.m01989 biotin carboxyl carrier protein of acet...    29   2.1  
At5g37920.1 68418.m04568 hypothetical protein contains Pfam PF04...    28   4.8  
At4g38495.1 68417.m05442 expressed protein                             27   8.4  
At1g52670.1 68414.m05947 biotin/lipoyl attachment domain-contain...    27   8.4  

>At5g26160.1 68418.m03111 expressed protein 
          Length = 1058

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 494 LGKNGYTMEPGTNYPQT*RPRRHSARRWSLPTQRQSTITC 613
           +G  G  +EPG ++P   + ++ S  RW L      TI C
Sbjct: 875 IGLAGLKIEPGADHPWCTKSQQQSGSRWLLANGTDKTIKC 914


>At3g15690.2 68416.m01989 biotin carboxyl carrier protein of
           acetyl-CoA carboxylase-related contains weak similarity
           to Biotin carboxyl carrier protein of acetyl-CoA
           carboxylase, chloroplast precursor (BCCP)
           (Swiss-Prot:Q42533) [Arabidopsis thaliana]
          Length = 263

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 342 SDVTGSVAVVHGHDGDPVGY 283
           SDVTG V  +   DG+PVGY
Sbjct: 226 SDVTGEVVKILREDGEPVGY 245


>At5g37920.1 68418.m04568 hypothetical protein contains Pfam PF04510
           : Family of unknown function (DUF577)); common family
           comprised of  At5g37410, At5g37400, At5g37920,
           At5g37460, At5g37650, At5g37470, At5g37420, At5g37430 
           contains Pfam PF04510 : Family of unknown function
           (DUF577)
          Length = 609

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -2

Query: 292 CWVFAFPRCGPYCERKLFVHIVA-PREASYLVKVSHFSFSPVIDLCTSPLSIGIFTR 125
           CWV  F   G +C     +H++  P  A Y+ +++H     + +L    + +GI  R
Sbjct: 483 CWVLVFR--GAFCAA---IHLIEDPGYAKYVKEIAHKMIDSIRELVEREMEVGIVRR 534


>At4g38495.1 68417.m05442 expressed protein
          Length = 124

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +1

Query: 412 RIVNASEDRSLPTDILTILTTSKISSVTWQKRLYYGAGYELP-ADLKTQTAFSTKMVFAD 588
           +I+ A     LP D+ T +      S    KRL    GYE P  D +T   ++   VF  
Sbjct: 42  QILQAENFPDLPPDLPTYVNIESPPSTQPCKRLCDITGYEAPYVDPRTNLRYANAHVFQT 101

Query: 589 ATSINN 606
             S+++
Sbjct: 102 VRSLSS 107


>At1g52670.1 68414.m05947 biotin/lipoyl attachment domain-containing
           protein similar to SP|Q06881 Biotin carboxyl carrier
           protein of acetyl-CoA carboxylase (BCCP) {Anabaena sp.};
           contains Pfam profile PF00364: Biotin-requiring enzyme
          Length = 274

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 342 SDVTGSVAVVHGHDGDPVGY 283
           SDV+G +  +   DG+PVGY
Sbjct: 237 SDVSGEIVKILREDGEPVGY 256


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,596,977
Number of Sequences: 28952
Number of extensions: 282062
Number of successful extensions: 790
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)