Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00690
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    37   0.003
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    29   0.91 
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    28   1.6  
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ...    27   3.7  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    26   4.8  
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    26   6.4  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   6.4  

>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
 Frame = -3

Query: 218 SSIQNLIRDDKLWFTRIMQQIHRHACLWSGIR--FYDIRFSNYR 93
           S + +   DD+L+   ++QQ  + + LWS I+  F+DI+++NYR
Sbjct: 257 SEVDSAEEDDELFQNYVLQQTRKESKLWSFIKKVFHDIKYANYR 300


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 576 QHFEQPKDVKLLNRFMFRFANNRIIDSLG 490
           Q F  P + + ++RFM +FA   I D+LG
Sbjct: 788 QKFRLPGEAQKIDRFMLKFAEKYIDDNLG 816


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
 Frame = -2

Query: 723 N*IVNERTSERTKR*TNA*HQNLESNTR-SLIPLKNMSNGRSRRVE*FSTQHFEQPKDVK 547
           N I NERT + T         N    T  S+I   NM+ G +  +         +P+   
Sbjct: 416 NNISNERTFDFTHYKAEYDFPNDHGTTHLSVIDKDNMAVGLTASINLMFGSQLLEPETGI 475

Query: 546 LLNRFMFRFANNRIIDSLG--PGINENVPAGKARPERRTERRFIYYKG 409
           +LN  M  FA+  I+++ G  P     +  GK RP+       + Y G
Sbjct: 476 ILNDHMDDFASPGIVNAFGLSPSPYNFIAPGK-RPQSSAVPTILVYNG 522


>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
           Cct4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 576 QHFEQPKDVKLLNRFMFRFANNRIIDSLGP-GINENVPAGK 457
           Q  E+P++V+L N    R   + I  SLGP G+++ +  GK
Sbjct: 12  QDREKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGK 52


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +2

Query: 311 LLDMYRRRAVITSHAAPTCGARLDARRAGSVSFPL*YINRRSVLRSGRAFPAGTFSLIP 487
           L+D  + +A I  +A+         R   +V+ P   ++  + + S  AFP    SLIP
Sbjct: 325 LVDKAKAKASIKENASQPVAPSASQREHSAVNSPAAAMSPSTAMFSSEAFPQHLASLIP 383


>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 292 IFMRSKLTRYVPPTCSYHESRGSD 363
           ++  S +T + P  C+Y  +RG+D
Sbjct: 279 VYFVSDITEFTPLACAYARARGAD 302


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 506 IRLFANRNINRFKSLTSFGCSKCCVENYSTRLDLPLDMFFSGISDL 643
           IRLF  + ++ + S  S  C     +N    +   L +FF GI+++
Sbjct: 473 IRLFDGKKLHSWISPMSITCGSSFADNVCVAVAGGLILFFEGITEV 518


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,765,137
Number of Sequences: 5004
Number of extensions: 55132
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)